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Os07g0644300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to XPA-binding protein 2 (Adapter protein ATH-55).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0149) R2 : 0.402
β1 : 0.898 (0.0547) R2dD : 0.367 R2D : 0.256
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.29 (0.0319) R2dN8 : 0.146 R2N8 : 0.0354
σ : 0.28
deviance : 35.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.8 0.256 11.7 0.975 0.409 -0.459 -0.704 0.369 0.299 12.1 0.13 30 -- --
29.77 0.256 11.7 0.942 0.363 -0.422 -0.292 -- 0.292 12.1 0.14 42 -- --
29.94 0.257 11.7 0.927 0.356 -0.415 -- -0.169 0.29 12.2 0.1301 32 -- --
30.13 0.257 11.7 0.931 0.362 -0.42 -- -- 0.291 12.2 0.1301 32 -- --
31.91 0.265 11.7 0.903 -- -0.183 -- -0.196 0.287 -- 0.1301 32 -- --
33.95 0.273 11.7 0.913 0.148 -- 0.443 -- 0.291 21.6 -- -- -- --
34.67 0.276 11.7 0.896 0.146 -- -- -- 0.29 22.1 -- -- -- --
32.16 0.265 11.7 0.907 -- -0.184 -- -- 0.288 -- 0.1346 18 -- --
52.8 0.34 11.7 -- 0.258 -0.341 -- -- 0.188 12.2 0.1301 32 -- --
35.96 0.28 11.7 0.898 -- -- -- -- 0.29 -- -- -- -- --
55.81 0.349 11.7 -- 0.151 -- -- -- 0.19 22.5 -- -- -- --
53.84 0.343 11.7 -- -- -0.173 -- -- 0.188 -- 0.1346 18 -- --
57.21 0.353 11.7 -- -- -- -- -- 0.191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.39 radiation 1.0 30 > th dose independent sin 10 NA
2 25.54 radiation 1.0 30 < th dose dependent sin 10 NA
5 25.65 temperature 10.0 10 > th dose dependent rect. 8 21
10 25.87 radiation 1.0 10 < th dose independent sin 10 NA
27 26.44 temperature 20.0 10 > th dose independent rect. 8 21
31 26.62 atmosphere 995.0 10 > th dose dependent rect. 5 4
39 26.73 atmosphere 1005.0 10 > th dose independent rect. 5 4
46 26.87 radiation 1.0 30 > th dose independent rect. 5 4
102 27.06 temperature 15.0 10 > th dose dependent rect. 22 7
114 27.07 wind 9.0 10 < th dose dependent rect. 5 4
122 27.18 precipitation 0.1 10 < th dose independent rect. 5 4
123 27.18 precipitation 0.1 10 < th dose dependent rect. 5 4
127 27.21 wind 7.0 10 < th dose independent rect. 5 4
129 27.21 temperature 10.0 10 > th dose independent rect. 5 4
131 27.21 temperature 30.0 10 < th dose independent rect. 5 4
132 27.21 humidity 50.0 10 > th dose independent rect. 5 4
134 27.21 atmosphere 995.0 10 > th dose independent rect. 5 4
135 27.21 atmosphere 1015.0 10 < th dose independent rect. 5 4
136 27.21 temperature 10.0 10 > th dose independent rect. 9 20
137 27.22 temperature 10.0 10 > th dose dependent rect. 5 4
140 27.24 temperature 20.0 10 > th dose independent rect. 22 7
142 27.28 radiation 40.0 10 < th dose independent rect. 5 4
146 27.32 wind 9.0 10 < th dose independent rect. 9 20
154 27.38 atmosphere 995.0 270 > th dose dependent rect. 5 1
187 27.45 atmosphere 995.0 10 > th dose independent rect. 9 20
213 27.51 wind 7.0 90 < th dose dependent rect. 5 2
227 27.52 atmosphere 1015.0 10 < th dose independent rect. 9 20
239 27.55 radiation 40.0 10 < th dose dependent rect. 5 5
259 27.61 wind 5.0 90 < th dose independent rect. 5 2
264 27.62 precipitation 0.1 10 < th dose independent rect. 9 20
266 27.62 precipitation 0.1 10 < th dose dependent rect. 9 20
267 27.63 precipitation 0.1 90 < th dose independent rect. 5 2
269 27.63 precipitation 0.1 90 < th dose dependent rect. 5 2
270 27.63 radiation 40.0 90 < th dose dependent rect. 5 4
274 27.66 temperature 10.0 270 > th dose dependent rect. 5 1
278 27.67 temperature 10.0 90 > th dose independent rect. 5 2
280 27.67 temperature 30.0 90 < th dose independent rect. 5 2
281 27.67 humidity 50.0 90 > th dose independent rect. 5 2
283 27.67 atmosphere 995.0 90 > th dose independent rect. 5 2
284 27.67 atmosphere 1015.0 90 < th dose independent rect. 5 2
285 27.67 radiation 40.0 90 < th dose independent rect. 5 2
290 27.67 temperature 10.0 90 > th dose independent rect. 7 22
335 27.75 humidity 50.0 10 > th dose dependent rect. 18 11
349 27.78 wind 9.0 90 < th dose independent rect. 7 22
395 27.90 atmosphere 995.0 270 > th dose dependent rect. 3 4
403 27.94 radiation 1.0 90 > th dose dependent rect. 4 3
430 27.95 radiation 1.0 10 > th dose dependent rect. 18 13
442 27.98 precipitation 0.1 270 < th dose independent rect. 3 4
443 27.98 temperature 20.0 10 > th dose independent rect. 18 11
446 27.98 precipitation 0.1 270 < th dose dependent rect. 3 4
449 27.99 atmosphere 995.0 90 > th dose independent rect. 7 22
454 28.00 precipitation 0.1 90 < th dose independent rect. 7 22
455 28.00 radiation 1.0 10 > th dose dependent rect. 5 2
466 28.00 wind 9.0 30 < th dose dependent rect. 9 20
467 28.00 precipitation 0.1 90 < th dose dependent rect. 7 22
500 28.05 humidity 50.0 90 > th dose dependent rect. 5 4
535 28.10 radiation 40.0 90 < th dose dependent rect. 5 2
575 28.14 humidity 50.0 90 > th dose dependent rect. 5 2
580 28.15 humidity 50.0 10 > th dose independent rect. 9 20
586 28.18 wind 7.0 270 < th dose independent rect. 3 4
592 28.19 radiation 20.0 270 < th dose independent rect. 3 4
597 28.19 humidity 50.0 10 > th dose dependent rect. 5 4
599 28.20 humidity 70.0 270 > th dose independent rect. 3 4
612 28.23 temperature 10.0 270 > th dose independent rect. 3 4
614 28.23 temperature 30.0 270 < th dose independent rect. 3 4
615 28.23 humidity 50.0 270 > th dose independent rect. 3 4
617 28.23 atmosphere 995.0 270 > th dose independent rect. 3 4
619 28.23 atmosphere 1015.0 270 < th dose independent rect. 3 4
657 28.29 radiation 1.0 10 < th dose dependent rect. 18 12
685 28.34 temperature 30.0 30 < th dose independent rect. 5 13
694 28.35 radiation 40.0 270 < th dose dependent rect. 3 4
698 28.36 radiation 1.0 30 < th dose dependent rect. 18 14
723 28.40 wind 1.0 90 > th dose independent rect. 9 20
770 28.47 wind 9.0 270 < th dose dependent rect. 3 4
788 28.50 temperature 30.0 10 < th dose independent rect. 18 11
789 28.50 radiation 1.0 10 < th dose independent rect. 18 12
807 28.53 radiation 1.0 30 > th dose independent rect. 14 19
862 28.60 temperature 10.0 270 > th dose dependent rect. 18 9
865 28.62 wind 1.0 270 > th dose independent rect. 5 1
869 28.62 wind 9.0 10 < th dose independent rect. 18 11
888 28.63 humidity 50.0 90 > th dose independent rect. 7 22
929 28.66 humidity 60.0 10 > th dose dependent rect. 22 7
944 28.68 temperature 10.0 10 > th dose independent rect. 18 11
945 28.68 humidity 50.0 10 > th dose independent rect. 18 11
947 28.68 radiation 20.0 10 < th dose independent rect. 18 11
950 28.68 temperature 10.0 10 > th dose independent rect. 5 13
952 28.68 atmosphere 1015.0 10 < th dose independent rect. 5 13
954 28.68 precipitation 0.1 10 < th dose independent rect. 5 13
960 28.68 precipitation 0.1 10 < th dose dependent rect. 5 13
961 28.69 atmosphere 995.0 10 > th dose independent rect. 18 11
985 28.71 radiation 1.0 10 < th dose dependent rect. 22 8
991 28.72 wind 9.0 10 < th dose independent rect. 5 13