Os01g0686600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os01g0686600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.12 | 0.65 | 3.1 | -0.0731 | 0.168 | 0.442 | -0.0958 | 0.211 | 0.00191 | 8.46 | 19.99 | 112 | -- | -- |
| 191.33 | 0.644 | 3.1 | -0.0596 | 0.173 | 0.419 | -0.152 | -- | 0.00126 | 8.26 | 19.9 | 112 | -- | -- |
| 191.14 | 0.644 | 3.1 | -0.076 | 0.167 | 0.448 | -- | 0.224 | 0.00293 | 8.85 | 19.96 | 114 | -- | -- |
| 190.8 | 0.643 | 3.09 | -0.0501 | 0.177 | 0.406 | -- | -- | 0.0252 | 9.4 | 20.9 | 122 | -- | -- |
| 192.66 | 0.646 | 3.11 | -0.0806 | -- | 0.442 | -- | 0.268 | 0.002 | -- | 19.93 | 132 | -- | -- |
| 197.3 | 0.658 | 3.12 | -0.162 | 0.169 | -- | -0.336 | -- | -0.0646 | 6.12 | -- | -- | -- | -- |
| 197.52 | 0.658 | 3.12 | -0.164 | 0.17 | -- | -- | -- | -0.063 | 6.79 | -- | -- | -- | -- |
| 192.17 | 0.646 | 3.1 | -0.0317 | -- | 0.408 | -- | -- | 0.0376 | -- | 20.99 | 312 | -- | -- |
| 190.86 | 0.643 | 3.09 | -- | 0.172 | 0.4 | -- | -- | 0.0327 | 9.3 | 21 | 130 | -- | -- |
| 199.03 | 0.659 | 3.12 | -0.16 | -- | -- | -- | -- | -0.0597 | -- | -- | -- | -- | -- |
| 198.23 | 0.659 | 3.11 | -- | 0.168 | -- | -- | -- | -0.0447 | 6.84 | -- | -- | -- | -- |
| 192.19 | 0.646 | 3.1 | -- | -- | 0.414 | -- | -- | 0.0427 | -- | 20.99 | 314 | -- | -- |
| 199.71 | 0.66 | 3.12 | -- | -- | -- | -- | -- | -0.0419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.97 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 3 | 181.89 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 4 | 181.93 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 5 | 182.06 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 6 |
| 8 | 182.18 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 1 |
| 10 | 182.21 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 6 |
| 15 | 182.30 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 22 | 182.43 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 13 |
| 27 | 182.91 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 28 | 182.92 | wind | 3 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 40 | 183.35 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 4 |
| 49 | 183.59 | humidity | 80 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 58 | 183.75 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 4 |
| 63 | 183.80 | humidity | 90 | 270 | < th | dose independent | rect. | 4 | 1 |
| 67 | 183.82 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 91 | 184.02 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 2 |
| 140 | 184.24 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 178 | 184.49 | wind | 5 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 200 | 184.74 | humidity | 80 | 30 | < th | dose dependent | rect. | 24 | 4 |
| 203 | 184.75 | humidity | 80 | 30 | < th | dose independent | rect. | 24 | 5 |
| 211 | 184.78 | humidity | 80 | 30 | < th | dose dependent | rect. | 24 | 2 |
| 230 | 184.93 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 233 | 185.11 | humidity | 80 | 30 | < th | dose independent | rect. | 24 | 7 |
| 250 | 185.69 | humidity | 80 | 30 | < th | dose dependent | rect. | 24 | 7 |
| 274 | 186.10 | humidity | 90 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 276 | 186.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 287 | 186.45 | temperature | 20 | 10 | > th | dose independent | rect. | 4 | 2 |
| 325 | 187.37 | temperature | 20 | 90 | < th | dose independent | sin | 0 | NA |
| 341 | 187.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 352 | 187.81 | humidity | 90 | 720 | < th | dose independent | rect. | 1 | 2 |
| 364 | 187.93 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 374 | 187.98 | radiation | 1 | 30 | < th | dose dependent | rect. | 4 | 8 |
| 386 | 188.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 439 | 188.30 | radiation | 1 | 30 | < th | dose dependent | rect. | 4 | 4 |
| 445 | 188.32 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 458 | 188.36 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 20 |
| 476 | 188.43 | temperature | 20 | 90 | > th | dose independent | sin | 23 | NA |
| 480 | 188.43 | radiation | 1 | 30 | < th | dose dependent | rect. | 4 | 2 |
| 549 | 188.69 | humidity | 80 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 552 | 188.72 | humidity | 90 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 595 | 188.93 | humidity | 90 | 90 | > th | dose independent | rect. | 18 | 1 |
| 596 | 188.93 | radiation | 1 | 30 | < th | dose independent | rect. | 4 | 8 |
| 624 | 189.04 | humidity | 80 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 630 | 189.06 | humidity | 80 | 270 | > th | dose independent | rect. | 22 | 9 |
| 639 | 189.10 | radiation | 1 | 30 | < th | dose independent | rect. | 4 | 2 |
| 646 | 189.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 657 | 189.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 665 | 189.16 | humidity | 80 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 668 | 189.17 | temperature | 20 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 675 | 189.19 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 1 |
| 692 | 189.20 | radiation | 1 | 30 | < th | dose independent | rect. | 4 | 4 |
| 736 | 189.30 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 793 | 189.51 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 3 |
| 795 | 189.52 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 11 |
| 800 | 189.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 849 | 189.75 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 23 |
| 863 | 189.78 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 869 | 189.80 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 881 | 189.85 | humidity | 90 | 10 | > th | dose independent | rect. | 22 | 7 |
| 894 | 189.89 | humidity | 80 | 10 | < th | dose independent | sin | 7 | NA |
| 897 | 189.89 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 23 |
| 917 | 189.97 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 924 | 190.01 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 11 |
| 940 | 190.07 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 10 |
| 958 | 190.11 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 19 |
| 965 | 190.14 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 12 |
| 969 | 190.15 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 986 | 190.17 | humidity | 90 | 30 | > th | dose independent | rect. | 4 | 17 |
| 1000 | 190.19 | humidity | 80 | 90 | > th | dose independent | rect. | 4 | 1 |