BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0686600 Os01g0686600|AK119910
         (396 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28740.1  | chr5:10780774-10783772 FORWARD LENGTH=918          163   2e-40

>AT5G28740.1 | chr5:10780774-10783772 FORWARD LENGTH=918
          Length = 917

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 104/161 (64%), Gaps = 3/161 (1%)

Query: 95  AIALMRQATAEPSAEVKLRXXXXXXGDDEPAQLKLHKSAKLWSFYVDLEESLGALASTRX 154
           A+ LMR+ATA P+ EV+ R        +EP Q+KLH+S +LWSFYVDLEESLG L STR 
Sbjct: 480 ALELMRRATAVPTVEVRRRVAA---DGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRA 536

Query: 155 XXXXXXXXXXXTPQMVINYASFLEERGYFEDSFAAYETGANLFGHPHSKPIWDTYLERFV 214
                      TPQ+++NYA  LEE  YFED+F  YE G  +F +PH K IW TYL +FV
Sbjct: 537 VYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFV 596

Query: 215 ARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF 255
            R+G +K ERARELF  A   AP      L+L++A+ EE++
Sbjct: 597 KRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDY 637



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,812,154
Number of extensions: 141606
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)