BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0686600 Os01g0686600|AK119910
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0686600  Tetratricopeptide-like helical domain containi...   396   e-110
Os07g0644300  Similar to XPA-binding protein 2 (Adapter prot...   183   2e-46
Os06g0235800                                                      143   2e-34

>Os01g0686600 Tetratricopeptide-like helical domain containing protein
          Length = 396

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/240 (84%), Positives = 203/240 (84%)

Query: 16  SEADLPYEEDVLRDPHSIXXXXXXXXXXXXXXXXXXXVIYERAVRALPGSYKLWHAYLLE 75
           SEADLPYEEDVLRDPHSI                   VIYERAVRALPGSYKLWHAYLLE
Sbjct: 16  SEADLPYEEDVLRDPHSIRPWRRYLAARAAAPLQERAVIYERAVRALPGSYKLWHAYLLE 75

Query: 76  RTAAAARAKPHCGEHPANKAIALMRQATAEPSAEVKLRXXXXXXGDDEPAQLKLHKSAKL 135
           RTAAAARAKPHCGEHPANKAIALMRQATAEPSAEVKLR      GDDEPAQLKLHKSAKL
Sbjct: 76  RTAAAARAKPHCGEHPANKAIALMRQATAEPSAEVKLRAAAAAAGDDEPAQLKLHKSAKL 135

Query: 136 WSFYVDLEESLGALASTRXXXXXXXXXXXXTPQMVINYASFLEERGYFEDSFAAYETGAN 195
           WSFYVDLEESLGALASTR            TPQMVINYASFLEERGYFEDSFAAYETGAN
Sbjct: 136 WSFYVDLEESLGALASTRAAYEGAMAARAATPQMVINYASFLEERGYFEDSFAAYETGAN 195

Query: 196 LFGHPHSKPIWDTYLERFVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF 255
           LFGHPHSKPIWDTYLERFVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF
Sbjct: 196 LFGHPHSKPIWDTYLERFVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF 255



>Os07g0644300 Similar to XPA-binding protein 2 (Adapter protein ATH-55)
          Length = 931

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 112/163 (68%), Gaps = 3/163 (1%)

Query: 93  NKAIALMRQATAEPSAEVKLRXXXXXXGDDEPAQLKLHKSAKLWSFYVDLEESLGALAST 152
           +KAI LMRQATAEPS EVK R        DEP QLK+HKS KLWSFYVDLEESLG L ST
Sbjct: 489 DKAIELMRQATAEPSVEVKRRAAAE---GDEPVQLKVHKSLKLWSFYVDLEESLGTLEST 545

Query: 153 RXXXXXXXXXXXXTPQMVINYASFLEERGYFEDSFAAYETGANLFGHPHSKPIWDTYLER 212
           R            TPQ+V+NYA  LEE  YFED+F  YE G  +F +PH K IW TYL +
Sbjct: 546 RAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTK 605

Query: 213 FVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF 255
           FV R+  SK ERARELF EA ++APP ++  L+L++A+ EE++
Sbjct: 606 FVRRYQRSKLERARELFDEAVKQAPPQEKKVLYLQYAKLEEDY 648



>Os06g0235800 
          Length = 801

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 89  EHPANKAIALMRQATAEPSAEVKLRXXXXXXGDDEPAQLKLHKSAKLWSFYVDLEESLGA 148
           +H AN+AI L+RQAT+EPS EV+ R      G+    Q KLH+S KLW FY DL E+ G+
Sbjct: 447 QHNANRAIELIRQATSEPSLEVR-RQVAAGVGE-TVVQTKLHRSLKLWCFYADLMETHGS 504

Query: 149 LASTRXXXXXXXXXXXXTPQMVINYASFLEERGYFEDSFAAYETGANLFGHPHSKPIWDT 208
             ST             TP +V+ +AS L+E   FED+F  YE G   F +PH + IW  
Sbjct: 505 PESTCAVYDRMHELGIITPLLVLRHASLLQEHKRFEDAFRVYERGVRTFKYPHDEAIWAA 564

Query: 209 YLERFVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEF 255
           YL +FV RHG SK +R R+LF +A R AP   +A +++++AR+EE+F
Sbjct: 565 YLTKFVERHGASKPQRVRDLFDDAVRHAPAEKKAAVYMQYARFEEDF 611




 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 16 SEADLPYEEDVLRDPHSIXXXXXXXXXXXXXXXXXXXVIYERAVRALPGSYKLWHAYLLE 75
          S  D+PYEEDVLR+P  +                   VIYERA+RALPGSYKLWHAYL E
Sbjct: 8  SPEDVPYEEDVLREPFRLRCWTRYLSAIRSAPLAKRSVIYERALRALPGSYKLWHAYLTE 67

Query: 76 RTAAAARAKP 85
            A AARA P
Sbjct: 68 -LADAARAMP 76



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,159,066
Number of extensions: 260192
Number of successful extensions: 663
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 5
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)