Os05g0289400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CRN (Crooked neck) protein.
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Os05g0289400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CRN (Crooked neck) protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.92 | 0.155 | 12.2 | 1.02 | 0.0553 | 0.512 | 0.28 | -0.198 | 0.331 | 19.5 | 80 | 1468 | -- | -- |
| 10.96 | 0.154 | 12.2 | 1 | 0.0549 | 0.5 | 0.271 | -- | 0.328 | 19.6 | 79.95 | 1464 | -- | -- |
| 11.11 | 0.155 | 12.2 | 1 | 0.0555 | 0.532 | -- | -0.207 | 0.329 | 20.5 | 80 | 1464 | -- | -- |
| 11.03 | 0.155 | 12.2 | 0.996 | 0.0796 | 0.503 | -- | -- | 0.34 | 23.2 | 79.45 | 1356 | -- | -- |
| 11.29 | 0.157 | 12.2 | 1 | -- | 0.506 | -- | -0.13 | 0.332 | -- | 80.19 | 1439 | -- | -- |
| 13.89 | 0.175 | 12.2 | 0.989 | 0.059 | -- | 0.314 | -- | 0.301 | 19.3 | -- | -- | -- | -- |
| 14.03 | 0.175 | 12.2 | 0.981 | 0.0721 | -- | -- | -- | 0.301 | 21.8 | -- | -- | -- | -- |
| 11.31 | 0.157 | 12.2 | 0.99 | -- | 0.498 | -- | -- | 0.331 | -- | 80.16 | 1432 | -- | -- |
| 34.68 | 0.274 | 12.2 | -- | 0.188 | 0.558 | -- | -- | 0.28 | 23 | 84 | 2362 | -- | -- |
| 14.34 | 0.177 | 12.2 | 0.981 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 39.38 | 0.294 | 12.2 | -- | 0.0773 | -- | -- | -- | 0.192 | 22.8 | -- | -- | -- | -- |
| 34.31 | 0.273 | 12.2 | -- | -- | 0.626 | -- | -- | 0.262 | -- | 86 | 1605 | -- | -- |
| 39.75 | 0.294 | 12.2 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 2 | 10.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 3 | 10.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 4 | 10.78 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 11 | 10.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 12 | 10.82 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 17 | 10.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 20 | 10.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 24 | 10.85 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 27 | 10.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 36 | 10.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 44 | 10.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 52 | 10.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 55 | 10.88 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 65 | 10.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 79 | 10.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 85 | 10.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 86 | 10.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 91 | 10.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 108 | 10.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 122 | 10.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 128 | 10.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 131 | 10.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 142 | 10.92 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 145 | 10.93 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 146 | 10.93 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 159 | 10.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 182 | 10.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 257 | 10.95 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 317 | 10.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 330 | 10.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 331 | 10.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 339 | 10.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 355 | 10.99 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 368 | 10.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 383 | 11.00 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 394 | 11.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 522 | 11.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 606 | 11.10 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 707 | 11.15 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 813 | 11.20 | humidity | 90 | 720 | > th | dose independent | rect. | 18 | 7 |
| 905 | 11.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |