BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0289400 Os05g0289400|AK100478
(723 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0289400 Similar to CRN (Crooked neck) protein 1318 0.0
Os06g0523800 Similar to CRN (Crooked neck) protein 885 0.0
Os10g0328700 Protein prenyltransferase domain containing pr... 604 e-173
>Os05g0289400 Similar to CRN (Crooked neck) protein
Length = 723
Score = 1318 bits (3410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/710 (92%), Positives = 659/710 (92%)
Query: 1 MALITPASXXXXXXXDKAPPSASDPSLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQI 60
MALITPAS DKAPPSASDPSLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQI
Sbjct: 1 MALITPASGGGGGGGDKAPPSASDPSLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQI 60
Query: 61 LREARERQEPEIRPPKQKITDSIELSEYRLRRRKEFEDVIRRVRWNVNAWVKYAKWEEQQ 120
LREARERQEPEIRPPKQKITDSIELSEYRLRRRKEFEDVIRRVRWNVNAWVKYAKWEEQQ
Sbjct: 61 LREARERQEPEIRPPKQKITDSIELSEYRLRRRKEFEDVIRRVRWNVNAWVKYAKWEEQQ 120
Query: 121 RDFARARSVYERALDVAHRDHTLWLKYAEFEMRNRFVNHARNVWDRAVSLLPRVDQLWYK 180
RDFARARSVYERALDVAHRDHTLWLKYAEFEMRNRFVNHARNVWDRAVSLLPRVDQLWYK
Sbjct: 121 RDFARARSVYERALDVAHRDHTLWLKYAEFEMRNRFVNHARNVWDRAVSLLPRVDQLWYK 180
Query: 181 YIHMEELLGAVANARQVFERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERFVAEHPR 240
YIHMEELLGAVANARQVFERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERFVAEHPR
Sbjct: 181 YIHMEELLGAVANARQVFERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERFVAEHPR 240
Query: 241 PDTFIRYAKFEMKRGEVERARQVYQRXXXXXXXXXXXQVLXXXXXXXXXXXXXXXXXXXI 300
PDTFIRYAKFEMKRGEVERARQVYQR QVL I
Sbjct: 241 PDTFIRYAKFEMKRGEVERARQVYQRAADLLADDEDAQVLFVAFAEFEERCREVERARAI 300
Query: 301 YKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWF 360
YKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWF
Sbjct: 301 YKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWF 360
Query: 361 DYIRLEESVGNNDRIREVYERAIANIPPADEKRYWQRYIYLWINYALYEELDAKDVERTR 420
DYIRLEESVGNNDRIREVYERAIANIPPADEKRYWQRYIYLWINYALYEELDAKDVERTR
Sbjct: 361 DYIRLEESVGNNDRIREVYERAIANIPPADEKRYWQRYIYLWINYALYEELDAKDVERTR 420
Query: 421 EVYSECLKLVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIFKKYIEI 480
EVYSECLKLVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIFKKYIEI
Sbjct: 421 EVYSECLKLVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIFKKYIEI 480
Query: 481 ELYLGNFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTP 540
ELYLGNFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTP
Sbjct: 481 ELYLGNFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTP 540
Query: 541 EVLWKEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIK 600
EVLWKEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIK
Sbjct: 541 EVLWKEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIK 600
Query: 601 KEVSYHEQQIERVRRCRAIFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGDLGDVTL 660
KEVSYHEQQIERVRRCRAIFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGDLGDVTL
Sbjct: 601 KEVSYHEQQIERVRRCRAIFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGDLGDVTL 660
Query: 661 VQXXXXXXXXXXXXXXTEDGSTVAYEEYIDYIFPDEVALAPNLKILEAAY 710
VQ TEDGSTVAYEEYIDYIFPDEVALAPNLKILEAAY
Sbjct: 661 VQKKAPRKVKRKRPIPTEDGSTVAYEEYIDYIFPDEVALAPNLKILEAAY 710
>Os06g0523800 Similar to CRN (Crooked neck) protein
Length = 699
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/536 (81%), Positives = 463/536 (86%), Gaps = 9/536 (1%)
Query: 175 DQLWYKYIHMEELLGAVANARQVFERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERF 234
DQLWYKYIHME++LGAVANAR+VFE WMAWRPD AGWNSYIKFELRYGE+ER RAI+ERF
Sbjct: 160 DQLWYKYIHMEQVLGAVANARKVFELWMAWRPDAAGWNSYIKFELRYGEIERVRAIFERF 219
Query: 235 VAEHPRPDTFIRYAKFEMKRGEVERARQVYQRXXXXXXXXXXXQVLXXXXXXXXXXXXXX 294
VAEHP+P TFI YAKFEMKRGEVERAR+VY+R +VL
Sbjct: 220 VAEHPQPHTFILYAKFEMKRGEVERARRVYERAADLLADDEHAEVLFVAFAEFEERCREV 279
Query: 295 XXXXXIYKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPL 354
+YKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPL
Sbjct: 280 ERARAVYKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPL 339
Query: 355 NYDSWFDYIRLEESVGNNDRIREVYERAIANIPPADEKRYWQRYIYLWINYALYEELDAK 414
NYDSWFDYIRLEESVGN DRIREVYERAIANIPPA+EKRYWQRYIYLWINYALYEELDAK
Sbjct: 340 NYDSWFDYIRLEESVGNKDRIREVYERAIANIPPAEEKRYWQRYIYLWINYALYEELDAK 399
Query: 415 DVERTREVYSECLKLVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIF 474
D+ERTREVYSECLKL+PHKK TF+KMWLMAAQFEIRQ+NLKAAR+ILGNAIGM+PKGKIF
Sbjct: 400 DMERTREVYSECLKLIPHKKLTFSKMWLMAAQFEIRQKNLKAARRILGNAIGMAPKGKIF 459
Query: 475 KKYIEIELYLGNFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQ 534
KKYIEIELYLGNF+RCRTLYEKYIEWSPANCYAW KYAELEK+L ETDRARSIYELAIAQ
Sbjct: 460 KKYIEIELYLGNFERCRTLYEKYIEWSPANCYAWMKYAELEKSLGETDRARSIYELAIAQ 519
Query: 535 PALDTPEVLWKEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDG 594
ALDTPEVLWKEYLQFEID+NEF RT ELYERLLDRTK LK AS GL GED
Sbjct: 520 SALDTPEVLWKEYLQFEIDKNEFHRTCELYERLLDRTKDLK---------ASVGLGGEDS 570
Query: 595 ESEEIKKEVSYHEQQIERVRRCRAIFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGD 654
+SEEIK EVSY +QQIE+VRRCRA+FERAFEYFRTSAPELKEERAMLLEEWLNKEVSFG
Sbjct: 571 QSEEIKNEVSYQQQQIEQVRRCRAVFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGH 630
Query: 655 LGDVTLVQXXXXXXXXXXXXXXTEDGSTVAYEEYIDYIFPDEVALAPNLKILEAAY 710
LGDVTLVQ +EDGST AYEEY+DYIFPDEVALAPNLKILEAAY
Sbjct: 631 LGDVTLVQKKAPRKVKRKRPDPSEDGSTTAYEEYMDYIFPDEVALAPNLKILEAAY 686
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 48/52 (92%)
Query: 19 PPSASDPSLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQILREARERQEP 70
P SASDP+LGFLTKRDTEVKLPRATRVKNKTPASVQITAEQILREAR + P
Sbjct: 17 PSSASDPTLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQILREARSGRSP 68
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 45/346 (13%)
Query: 108 NAWVKYAKWEEQQRDFARARSVYERALDVAHRD---HTLWLKYAEFEMRNRFVNHARNVW 164
+ ++ YAK+E ++ + RAR VYERA D+ D L++ +AEFE R R V AR V+
Sbjct: 227 HTFILYAKFEMKRGEVERARRVYERAADLLADDEHAEVLFVAFAEFEERCREVERARAVY 286
Query: 165 DRAVSLLPR--VDQLWYKYIHMEELLG--------AVANARQVFERWMAWRP-DTAGWNS 213
A+ +P+ ++L+ K++ E+ G V R +E + P + W
Sbjct: 287 KYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFD 346
Query: 214 YIKFELRYGEVERARAIYERFVAEHPRPD----------TFIRYAKF-EMKRGEVERARQ 262
YI+ E G +R R +YER +A P + +I YA + E+ ++ER R+
Sbjct: 347 YIRLEESVGNKDRIREVYERAIANIPPAEEKRYWQRYIYLWINYALYEELDAKDMERTRE 406
Query: 263 VYQRXXXXXXXXXXX-QVLXXXXXXXXXXXXXXXXXXXIYKYALDRVPKGQAEELYRKFL 321
VY + I A+ PKG+ +++K++
Sbjct: 407 VYSECLKLIPHKKLTFSKMWLMAAQFEIRQKNLKAARRILGNAIGMAPKGK---IFKKYI 463
Query: 322 AFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNNDRIREVYER 381
E G+ E + R YE + +P N +W Y LE+S+G DR R +YE
Sbjct: 464 EIELYLGNFE--------RCRTLYEKYIEWSPANCYAWMKYAELEKSLGETDRARSIYEL 515
Query: 382 AIANIPPADEKRYWQRYIYLWINYALYEELDAKDVERTREVYSECL 427
AIA + W+ Y+ E+D + RT E+Y L
Sbjct: 516 AIAQSALDTPEVLWKEYLQF--------EIDKNEFHRTCELYERLL 553
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 53/228 (23%)
Query: 91 RRRKEFEDVIRRVRWNVNAWVKYAKWEEQQRDFARARSVYERALD--------------- 135
+RR ++ED +R+ N ++W Y + EE + R R VYERA+
Sbjct: 325 KRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKDRIREVYERAIANIPPAEEKRYWQRYI 384
Query: 136 ------------------------------VAHRDHT---LWLKYAEFEMRNRFVNHARN 162
+ H+ T +WL A+FE+R + + AR
Sbjct: 385 YLWINYALYEELDAKDMERTREVYSECLKLIPHKKLTFSKMWLMAAQFEIRQKNLKAARR 444
Query: 163 VWDRAVSLLPRVDQLWYKYIHMEELLGAVANARQVFERWMAWRP-DTAGWNSYIKFELRY 221
+ A+ + P+ +++ KYI +E LG R ++E+++ W P + W Y + E
Sbjct: 445 ILGNAIGMAPK-GKIFKKYIEIELYLGNFERCRTLYEKYIEWSPANCYAWMKYAELEKSL 503
Query: 222 GEVERARAIYERFVAEHP--RPDTFIR-YAKFEMKRGEVERARQVYQR 266
GE +RAR+IYE +A+ P+ + Y +FE+ + E R ++Y+R
Sbjct: 504 GETDRARSIYELAIAQSALDTPEVLWKEYLQFEIDKNEFHRTCELYER 551
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 138/331 (41%), Gaps = 63/331 (19%)
Query: 355 NYDSWFDYIRLEESVGNNDRIREVYERAIANIPPADEKRYWQRYIYLWINY-------AL 407
N W+ YI +E+ +G R+V+E +A P A W YI + Y A+
Sbjct: 159 NDQLWYKYIHMEQVLGAVANARKVFELWMAWRPDAAG---WNSYIKFELRYGEIERVRAI 215
Query: 408 YE------------------ELDAKDVERTREVYSECLKLVPHKKFTFAKMWLMAAQFEI 449
+E E+ +VER R VY L+ + +++ A+FE
Sbjct: 216 FERFVAEHPQPHTFILYAKFEMKRGEVERARRVYERAADLLADDEHAEV-LFVAFAEFEE 274
Query: 450 RQRNLKAARQILGNAIGMSPKGK---IFKKYIEIELYLGN--------FDRCRTLYEKYI 498
R R ++ AR + A+ PKG+ +++K++ E G+ + R YE +
Sbjct: 275 RCREVERARAVYKYALDRVPKGQAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEV 334
Query: 499 EWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTPEVLWKEYLQF-------- 550
+P N +W Y LE+++ DR R +YE AIA + W+ Y+
Sbjct: 335 RKNPLNYDSWFDYIRLEESVGNKDRIREVYERAIANIPPAEEKRYWQRYIYLWINYALYE 394
Query: 551 EIDENEFDRTRELYERLLDRTKH-----LKVWISYTEFE--------ASAGLAGEDGESE 597
E+D + +RTRE+Y L H K+W+ +FE A L G +
Sbjct: 395 ELDAKDMERTREVYSECLKLIPHKKLTFSKMWLMAAQFEIRQKNLKAARRILGNAIGMAP 454
Query: 598 EIKKEVSYHEQQ--IERVRRCRAIFERAFEY 626
+ K Y E + + RCR ++E+ E+
Sbjct: 455 KGKIFKKYIEIELYLGNFERCRTLYEKYIEW 485
>Os10g0328700 Protein prenyltransferase domain containing protein
Length = 711
Score = 604 bits (1557), Expect = e-173, Method: Compositional matrix adjust.
Identities = 351/707 (49%), Positives = 459/707 (64%), Gaps = 43/707 (6%)
Query: 39 LPRATRVKNKTPASVQITAEQILREARERQEP-------EIRPPKQKITDSIELSEYRLR 91
LP RVKNK PA VQ+TAE ++REARE K++I D+ EL+E+RL
Sbjct: 2 LPTPRRVKNKAPAPVQLTAEHLIREARELHGDGSVTVCLPAESKKRRIVDADELAEHRLE 61
Query: 92 RRKEFEDVIRRVRWNVNA-------WVKYAKWEEQ----QRDFARARSVYERALDV---A 137
RR FE ++RR W++YA+WEE D ARARSVYERAL A
Sbjct: 62 RRARFEAIVRRAGSGRGGCGDASSEWMRYARWEESPGGGGGDPARARSVYERALAGGAPA 121
Query: 138 HRDHTLWLKYAEFEMRNRFVNHARNVWDRAVSLLPRVDQLWYKYIHMEELLGAVANARQV 197
+RDH +W+KYA+FE R V HARNV DRAV++LPR D++W +Y+ ME+LLGA NAR V
Sbjct: 122 YRDHGVWIKYAQFEARGGRVGHARNVLDRAVAILPRADRIWSEYLRMEDLLGATDNARVV 181
Query: 198 FERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERFVAEHPRPDTFIRYAKFEMKRGEV 257
F+RW +WRP W +Y FELR+GE++RARA++ER VA P D FI +A+FE K +
Sbjct: 182 FDRWTSWRPGADAWAAYAAFELRHGELDRARAVHERHVAALPCADAFILFAEFETKLKNL 241
Query: 258 ERARQVYQRXXXXXXXXXX---XQVLXXXXXXXXXXXXXXXXXXXIYKYAL-DRVPKGQA 313
+RA +VY+ VL IY++AL P+ +A
Sbjct: 242 DRAPRVYEHAGSLLAAAGDNDDTAVLLAAFADFEERCGEPDRARAIYQHALRGEPPEPRA 301
Query: 314 EELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEES--VGN 371
EEL K L+ EK+FGDR G+ED+IV KRR QYE V NPL YD+WFD IRLEES G+
Sbjct: 302 EELREKLLSLEKRFGDRHGVEDSIVTKRRSQYERAVTTNPLCYDAWFDLIRLEESANTGD 361
Query: 372 NDRIREVYERAIANIPPAD---EKRYWQRYIYLWINYALYEELDAKDVERTREVYSECLK 428
+RIR++Y RA+AN+PPA EKR+W+RYIYLWINYAL+EELDA+DV R R VY ECL+
Sbjct: 362 ANRIRDLYRRAVANVPPAAAAAEKRHWRRYIYLWINYALFEELDAEDVARARGVYRECLR 421
Query: 429 LVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIFKKYIEIELYLGNFD 488
+PHKKF+F+ + +MAA+ EIR +NL AAR++LGNAIG++P+ K+ ++YIEIEL LGN
Sbjct: 422 TIPHKKFSFSNICVMAAELEIRDKNLAAARRLLGNAIGVAPRPKLSRRYIEIELQLGNVG 481
Query: 489 RCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTPEVLWKEYL 548
RCR L +K+IE +P++ + WR YA LEK L ETDRARS+Y+LA++QPALD PE++W +Y+
Sbjct: 482 RCRILSQKFIEHAPSSSHVWRSYAALEKKLGETDRARSVYDLAVSQPALDAPELVWTDYI 541
Query: 549 QFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIKKEVSYHEQ 608
QFEID E DR R+LYERLL +T+HL VW+SY EFEA+A +
Sbjct: 542 QFEIDAGELDRARQLYERLLGKTQHLNVWVSYAEFEATA--------CSGGAAIAGNAAE 593
Query: 609 QIERVRRCRAIFERAFEYFRTSA--PELKEERAMLLEEWLNKEVSFGDLGDVTLVQXXXX 666
+ ERVRRCRA+ RA E+FR A P +KE RAMLL++WL KE +FGDLG+V V+
Sbjct: 594 KAERVRRCRAVCRRADEHFRGCADDPAMKEARAMLLQQWLAKEAAFGDLGEVEPVEKKTP 653
Query: 667 XXXXXXXXXXTE-DGSTVAYEEYIDYIFPDE--VALAPNLKILEAAY 710
+ +G EE+ DYIF DE A K+++AAY
Sbjct: 654 RRVKRKRSLLADGNGGGGGCEEFFDYIFGDEEDATAAAGFKLMKAAY 700
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,963,893
Number of extensions: 936654
Number of successful extensions: 3080
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2899
Number of HSP's successfully gapped: 9
Length of query: 723
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 615
Effective length of database: 11,396,689
Effective search space: 7008963735
Effective search space used: 7008963735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)