BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0644200 Os07g0644200|AK066335
         (337 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0644200  Similar to NodH (Fragment)                          703   0.0  
Os03g0363950  Conserved hypothetical protein                      522   e-148
Os03g0394900  Conserved hypothetical protein                      375   e-104
Os01g0784600  Conserved hypothetical protein                      325   3e-89

>Os07g0644200 Similar to NodH (Fragment)
          Length = 337

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MHPYSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRK 60
           MHPYSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRK
Sbjct: 1   MHPYSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRK 60

Query: 61  PHLPHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGE 120
           PHLPHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGE
Sbjct: 61  PHLPHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGE 120

Query: 121 IFNRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYL 180
           IFNRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYL
Sbjct: 121 IFNRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYL 180

Query: 181 NKKGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDV 240
           NKKGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDV
Sbjct: 181 NKKGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDV 240

Query: 241 SNLIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQV 300
           SNLIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQV
Sbjct: 241 SNLIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQV 300

Query: 301 KIHTSPLPGLVRNWDDVSNKLNGTQYAHFLDGADYVR 337
           KIHTSPLPGLVRNWDDVSNKLNGTQYAHFLDGADYVR
Sbjct: 301 KIHTSPLPGLVRNWDDVSNKLNGTQYAHFLDGADYVR 337



>Os03g0363950 Conserved hypothetical protein
          Length = 366

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/332 (74%), Positives = 285/332 (85%)

Query: 4   YSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRKPHL 63
           Y+LKS KG  FP R ILVFLIA+FGFYVCY SFNQI LEN+    SGE Q    CR+  +
Sbjct: 33  YALKSPKGPLFPLRSILVFLIALFGFYVCYFSFNQIDLENKENLISGEEQIRTLCRRHTI 92

Query: 64  PHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIFN 123
           P+E ++YVHFPKP SYSRGEC+C  VR FV++SMQRSGSGWFETLLNSHPN+SSNGEIF+
Sbjct: 93  PNELMQYVHFPKPTSYSRGECACTPVRFFVIISMQRSGSGWFETLLNSHPNVSSNGEIFS 152

Query: 124 RVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNKK 183
             +RRE+ISSIL+TLDKLYNLDW TSAAKNECTAAFGLKWMLNQG M+H+ DI +YLNKK
Sbjct: 153 IRERREDISSILRTLDKLYNLDWHTSAAKNECTAAFGLKWMLNQGIMEHYHDIVNYLNKK 212

Query: 184 GVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSNL 243
           GV VIFLFRRNTLRR+ISVLANDYDR  KQLNGTHK+HVHS+EEA+ILA+FKP LDV  L
Sbjct: 213 GVMVIFLFRRNTLRRIISVLANDYDRKTKQLNGTHKAHVHSREEADILARFKPKLDVPTL 272

Query: 244 IPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQVKIH 303
           IPNIR+AE+ I  CLDHF++TRHMILYYED++R++NAL +VQEFLGVP  +L SR VKIH
Sbjct: 273 IPNIRSAEQSITTCLDHFSSTRHMILYYEDVIRDQNALSRVQEFLGVPAMRLSSRHVKIH 332

Query: 304 TSPLPGLVRNWDDVSNKLNGTQYAHFLDGADY 335
           TSPLP LV NW++VS KLNGT+YA F+DGADY
Sbjct: 333 TSPLPDLVDNWEEVSEKLNGTEYARFVDGADY 364



>Os03g0394900 Conserved hypothetical protein
          Length = 362

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/330 (54%), Positives = 237/330 (71%), Gaps = 2/330 (0%)

Query: 6   LKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRKPHLPH 65
           +KSSK +P   R ++  +  I G ++C +   Q+  ++ S     EV AE  C K  + H
Sbjct: 33  VKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIEV-AEQLCNKSAILH 91

Query: 66  EELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIFNRV 125
            E+ +VH+P+P +YSR EC C  VR F ++S QRSGSGWFETLLNSH N+SSNGEIF+  
Sbjct: 92  SEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSNGEIFSSK 151

Query: 126 DRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNKKGV 185
           +RR NISSI +TLDK+YNLDW +SA+KNECTAA GLKWMLNQG + +H DIA Y N++GV
Sbjct: 152 ERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIADYFNRRGV 211

Query: 186 SVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSNLIP 245
           S IFLFR N LR+L+S LAN++DR  KQLNGTHK+HVH+  EA ILA++KP L+ ++LI 
Sbjct: 212 SAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRLNTTSLIR 271

Query: 246 NIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQVKIHTS 305
           +++  + Y RD L++  +  H+ +YYED++RNR  L  V +FL VP  KLVSR VKIHT 
Sbjct: 272 SLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPRSKLVSRHVKIHTK 331

Query: 306 PLPGLVRNWDDVSNKLNGTQYAHFLDGADY 335
           PL   + NWD+V N LNGTQY  FL+ ADY
Sbjct: 332 PLSEQIENWDEVYNALNGTQYESFLN-ADY 360



>Os01g0784600 Conserved hypothetical protein
          Length = 346

 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/274 (55%), Positives = 199/274 (72%), Gaps = 1/274 (0%)

Query: 5   SLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQ-ITLENRSEENSGEVQAEIHCRKPHL 63
           S KS++  P      ++ LIA+ G Y+  +S  Q   L    + +  E + E  C+ P +
Sbjct: 30  SAKSTRRYPLLSWTTILALIALVGVYIFSVSLKQNGMLLGLKQTDMIEKEREKLCQDPSI 89

Query: 64  PHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIFN 123
           P  E+ YVH+P P++YSR EC+C  VR F ++SMQRSGSGW ETLLNSH NISSNGEIF+
Sbjct: 90  PVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRSGSGWIETLLNSHENISSNGEIFS 149

Query: 124 RVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNKK 183
             +RR NI+SI +TLDKLYNLDW +SAAKNECTAA GLKWMLNQG + HH+++  Y N++
Sbjct: 150 IKERRSNITSITKTLDKLYNLDWLSSAAKNECTAAVGLKWMLNQGLVQHHEEVVEYFNRR 209

Query: 184 GVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSNL 243
           GVS IFL RRNTL+R +SVLAN +D  AKQ+NGTHKSHVHS+ EA+ILA+FKP +D   L
Sbjct: 210 GVSAIFLLRRNTLQRYVSVLANAHDSKAKQINGTHKSHVHSEREAQILAQFKPEIDTKKL 269

Query: 244 IPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRN 277
           I +++ ++K   D L +F  TRH+ILYYED+V N
Sbjct: 270 IADLKKSDKLAADALLYFKKTRHIILYYEDVVSN 303



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,566,322
Number of extensions: 467716
Number of successful extensions: 1085
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 4
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)