Os07g0644200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NodH (Fragment).
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Os07g0644200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NodH (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.1 | 0.448 | 8.58 | -0.685 | 3.55 | -0.596 | 2.97 | -1.44 | -0.467 | 5.81 | 1011 | 5915 | -- | -- |
| 92.81 | 0.449 | 8.61 | -0.987 | 3.55 | -0.465 | 3.26 | -- | -0.537 | 5.79 | 1010 | 11423 | -- | -- |
| 111.73 | 0.492 | 8.58 | -0.561 | 3.56 | -0.558 | -- | -1.69 | -0.46 | 5.8 | 1011 | 4908 | -- | -- |
| 113.72 | 0.497 | 8.63 | -1.01 | 3.54 | -0.535 | -- | -- | -0.582 | 5.8 | 1010 | 11325 | -- | -- |
| 763.8 | 1.29 | 8.62 | -0.451 | -- | -0.716 | -- | -1.94 | -0.321 | -- | 1010 | 4011 | -- | -- |
| 101.68 | 0.473 | 8.59 | -0.868 | 3.56 | -- | 2.99 | -- | -0.424 | 5.8 | -- | -- | -- | -- |
| 123.62 | 0.521 | 8.6 | -0.849 | 3.58 | -- | -- | -- | -0.436 | 5.79 | -- | -- | -- | -- |
| 768.61 | 1.29 | 8.67 | -0.965 | -- | -0.743 | -- | -- | -0.427 | -- | 1009 | 9973 | -- | -- |
| 139.06 | 0.549 | 8.59 | -- | 3.55 | -0.357 | -- | -- | -0.395 | 5.79 | 1008 | 11514 | -- | -- |
| 788.42 | 1.31 | 8.65 | -0.738 | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
| 142.6 | 0.559 | 8.58 | -- | 3.57 | -- | -- | -- | -0.341 | 5.8 | -- | -- | -- | -- |
| 792.33 | 1.31 | 8.65 | -- | -- | -0.522 | -- | -- | -0.329 | -- | 1009 | 10019 | -- | -- |
| 802.79 | 1.32 | 8.64 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.85 | humidity | 50.0 | 30 | > th | dose independent | rect. | 11 | 18 |
| 2 | 78.08 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 78.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 18 |
| 4 | 78.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 6 | 78.34 | temperature | 15.0 | 30 | > th | dose independent | rect. | 11 | 18 |
| 12 | 78.61 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 6 |
| 13 | 78.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 15 | 78.63 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 16 | 78.63 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 17 | 78.63 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 6 |
| 20 | 78.70 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 6 |
| 22 | 78.70 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 6 |
| 28 | 79.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 11 |
| 41 | 79.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 5 |
| 47 | 79.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 48 | 79.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 50 | 79.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 51 | 79.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 53 | 79.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 54 | 79.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 56 | 79.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 57 | 79.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 58 | 79.53 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 59 | 79.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 60 | 79.53 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 6 |
| 67 | 79.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 68 | 79.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 70 | 79.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 13 |
| 71 | 79.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 74 | 79.77 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 82 | 79.79 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 104 | 79.97 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 2 |
| 105 | 80.00 | wind | 1.0 | 90 | > th | dose independent | rect. | 10 | 18 |
| 106 | 80.01 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 6 |
| 110 | 80.07 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 134 | 80.10 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 139 | 80.14 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 11 | 18 |
| 145 | 80.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 146 | 80.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 147 | 80.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 152 | 80.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 153 | 80.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 175 | 80.42 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 178 | 80.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 183 | 80.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 184 | 80.58 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 205 | 80.80 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 236 | 81.08 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 246 | 81.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 266 | 81.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 269 | 81.54 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 270 | 81.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 288 | 81.60 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 292 | 81.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 308 | 81.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 309 | 81.75 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 6 |
| 319 | 81.87 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 388 | 82.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 404 | 82.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 13 |
| 472 | 83.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 485 | 83.40 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 489 | 83.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 491 | 83.47 | radiation | 10.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 492 | 83.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 506 | 83.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 529 | 83.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 11 |
| 532 | 83.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 537 | 83.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 20 |
| 543 | 83.75 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 4 |
| 557 | 83.87 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 559 | 83.89 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 19 |
| 579 | 84.01 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 582 | 84.04 | radiation | 1.0 | 10 | > th | dose independent | rect. | 14 | 21 |
| 631 | 84.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 643 | 84.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 661 | 84.49 | radiation | 40.0 | 90 | < th | dose independent | rect. | 10 | 19 |
| 773 | 85.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 11 |
| 776 | 85.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 789 | 85.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 803 | 85.13 | radiation | 40.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 805 | 85.15 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 10 |
| 840 | 85.31 | radiation | 1.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 869 | 85.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 11 |
| 870 | 85.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 872 | 85.58 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 889 | 85.64 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 903 | 85.76 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 983 | 86.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 21 |
| 986 | 86.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 998 | 86.22 | humidity | 50.0 | 10 | > th | dose independent | rect. | 11 | 3 |