BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0644200 Os07g0644200|AK066335
(337 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G15730.1 | chr2:6849797-6851881 FORWARD LENGTH=345 378 e-105
AT3G50620.1 | chr3:18784993-18786747 REVERSE LENGTH=341 370 e-103
AT4G34420.1 | chr4:16458430-16460526 FORWARD LENGTH=343 365 e-101
>AT2G15730.1 | chr2:6849797-6851881 FORWARD LENGTH=345
Length = 344
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/330 (54%), Positives = 238/330 (72%), Gaps = 7/330 (2%)
Query: 4 YSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIH---CRK 60
+ K K +P R +++ + + Y+C I QI + ++G + E+ C +
Sbjct: 13 FVFKLPKKSPLVLRTVVLLFVMVCTVYICSICLKQIGVV----PSAGFLNVEVFERPCPE 68
Query: 61 PHLPHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGE 120
P++ ++ YVH+PKP++YSR ECSCN VR F ++SMQRSGSGWFETLLN+H NISSNGE
Sbjct: 69 PNIQPWDIPYVHYPKPKTYSREECSCNPVRYFAILSMQRSGSGWFETLLNNHTNISSNGE 128
Query: 121 IFNRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYL 180
IF+ DRR N+S+I +TLDK+YNLDW +SA+KNECT+A GLKWMLNQG M +H++I Y
Sbjct: 129 IFSVKDRRANVSTIFETLDKVYNLDWLSSASKNECTSAVGLKWMLNQGLMKNHEEIVEYF 188
Query: 181 NKKGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDV 240
+GVS IFLFRRN LRR+ISVLAN YDRDAK LNGTHKSHVHS +EAEILA++KP+++
Sbjct: 189 KTRGVSAIFLFRRNLLRRMISVLANSYDRDAKPLNGTHKSHVHSPKEAEILARYKPLINT 248
Query: 241 SNLIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQV 300
S LIP+++ ++ L +FNTTRH+ LYYED+V+NR L VQEFL VP L SRQV
Sbjct: 249 SLLIPDLKQVQEMTSKALAYFNTTRHIFLYYEDVVKNRTKLDDVQEFLKVPKLDLKSRQV 308
Query: 301 KIHTSPLPGLVRNWDDVSNKLNGTQYAHFL 330
KIH PL V+NW++V L GT + +FL
Sbjct: 309 KIHHGPLSQHVQNWEEVQKTLKGTGFENFL 338
>AT3G50620.1 | chr3:18784993-18786747 REVERSE LENGTH=341
Length = 340
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 241/333 (72%), Gaps = 12/333 (3%)
Query: 6 LKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRKPHLPH 65
+K K +P R I++ + G Y+C + Q L N S + S VQ P H
Sbjct: 17 IKQPKKSPLFLRMIVLVFAMVCGLYICAVCLKQ--LSNVSFQTSQLVQTS-----PIDSH 69
Query: 66 EELRYV---HFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIF 122
LR+V H+PKP++++R EC N VR F ++SMQRSGSGWFETLLNSH N+SSNGEIF
Sbjct: 70 S-LRFVTRIHYPKPQTFNRAECGHNPVRYFAILSMQRSGSGWFETLLNSHNNVSSNGEIF 128
Query: 123 NRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNK 182
+ +DRR+NISSI+QTLD++YNLDWFTSA+KNEC+AA G KWMLNQG +++H DI Y N+
Sbjct: 129 SVLDRRKNISSIIQTLDRVYNLDWFTSASKNECSAAIGFKWMLNQGLLENHKDIVEYFNR 188
Query: 183 KGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSN 242
+GVS IFLFRRN LRR++SVLAN YDR AK LNGTHKSHVHS EA+ L+++KPV++ ++
Sbjct: 189 RGVSAIFLFRRNPLRRMVSVLANSYDRYAKLLNGTHKSHVHSPAEADALSRYKPVINSTS 248
Query: 243 LIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQVKI 302
LI +++ E L++FNTTRH++++YED++ N+ L QVQEFL +PV+ L SRQVKI
Sbjct: 249 LIHDLQETENSAAKALEYFNTTRHIVVFYEDLITNQTTLKQVQEFLNIPVKDLSSRQVKI 308
Query: 303 HTSPLPGLVRNWDDVSNKLNGTQYAHFLDGADY 335
H L ++NW+D++ LNGT+Y FL ADY
Sbjct: 309 HRGDLSDHIKNWEDINKTLNGTEYEKFLR-ADY 340
>AT4G34420.1 | chr4:16458430-16460526 FORWARD LENGTH=343
Length = 342
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/330 (53%), Positives = 233/330 (70%), Gaps = 7/330 (2%)
Query: 4 YSLKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIH---CRK 60
+ LK K + R +++ + + Y+C I QI + N G + E+ C +
Sbjct: 13 FVLKLPKKSSLVLRMVVLLFVMVCAVYICSICLKQIGVS----PNYGFLNVEVFERPCPE 68
Query: 61 PHLPHEELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGE 120
P++ ++ +VH+PKP++Y+R ECSC+ VR F ++SMQRSGSGWFETLLN+H NISSNGE
Sbjct: 69 PNIEPWDIPFVHYPKPKTYNRDECSCHPVRYFAILSMQRSGSGWFETLLNNHTNISSNGE 128
Query: 121 IFNRVDRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYL 180
IF+ DRR N+S+I +TLDK+YNLDW +SA+KNECT+A G KWMLNQG M HH++I Y
Sbjct: 129 IFSVKDRRANVSTIFETLDKVYNLDWLSSASKNECTSAVGFKWMLNQGLMKHHEEIVEYF 188
Query: 181 NKKGVSVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDV 240
+GVS IFLFR+N LRR+ISVLAN YDRDAK LNGTHKSH HS +EAEILA +KP+++
Sbjct: 189 KTRGVSAIFLFRKNLLRRMISVLANSYDRDAKLLNGTHKSHTHSAKEAEILAGYKPMINT 248
Query: 241 SNLIPNIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQV 300
+ LI +R ++ L +FNTTRH+++YYED+V+N L VQEFL VP RKL SRQV
Sbjct: 249 TLLINELRQIQEMTLKALTYFNTTRHILVYYEDVVKNLTRLDDVQEFLKVPKRKLKSRQV 308
Query: 301 KIHTSPLPGLVRNWDDVSNKLNGTQYAHFL 330
KIH L V+NW++V L GT + +FL
Sbjct: 309 KIHGGSLSKHVQNWEEVMTTLKGTNFENFL 338
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,708,950
Number of extensions: 327059
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)