Os03g0394900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0394900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.25 | 0.562 | 6.43 | 0.918 | 1.59 | -1.35 | 0.446 | 0.482 | 0.422 | 20.3 | 81.09 | 1235 | -- | -- |
| 142.49 | 0.556 | 6.44 | 0.846 | 1.71 | -1.4 | 0.548 | -- | 0.42 | 20.5 | 83.98 | 1124 | -- | -- |
| 142.55 | 0.556 | 6.41 | 0.917 | 1.68 | -1.43 | -- | 0.864 | 0.458 | 20.4 | 83.51 | 1141 | -- | -- |
| 143.41 | 0.558 | 6.43 | 0.84 | 1.69 | -1.37 | -- | -- | 0.426 | 20.4 | 83.62 | 1139 | -- | -- |
| 270.87 | 0.767 | 6.38 | 0.821 | -- | -1.27 | -- | 0.333 | 0.425 | -- | 85.9 | 1398 | -- | -- |
| 181.21 | 0.631 | 6.42 | 0.655 | 1.53 | -- | 0.219 | -- | 0.457 | 19.8 | -- | -- | -- | -- |
| 181.34 | 0.631 | 6.42 | 0.65 | 1.54 | -- | -- | -- | 0.457 | 19.7 | -- | -- | -- | -- |
| 271.03 | 0.767 | 6.39 | 0.791 | -- | -1.24 | -- | -- | 0.419 | -- | 85.69 | 1400 | -- | -- |
| 160.7 | 0.59 | 6.44 | -- | 1.85 | -1.51 | -- | -- | 0.406 | 20.5 | 94 | 1017 | -- | -- |
| 308.65 | 0.821 | 6.38 | 0.63 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 192.47 | 0.649 | 6.44 | -- | 1.53 | -- | -- | -- | 0.385 | 19.8 | -- | -- | -- | -- |
| 286.5 | 0.788 | 6.4 | -- | -- | -1.15 | -- | -- | 0.362 | -- | 89.65 | 1405 | -- | -- |
| 319.14 | 0.834 | 6.4 | -- | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.07 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 142.08 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 3 | 142.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 4 | 142.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 22 | 143.88 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 51 | 145.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 71 | 145.58 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 73 | 145.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 89 | 145.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 115 | 145.97 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 140 | 146.17 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 151 | 146.28 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 158 | 146.33 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 12 |
| 160 | 146.36 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 230 | 146.77 | humidity | 90 | 1440 | < th | dose dependent | sin | 20 | NA |
| 329 | 147.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 335 | 147.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 336 | 147.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 340 | 147.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 355 | 147.46 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 412 | 147.71 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 428 | 147.83 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 540 | 148.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 546 | 148.34 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 553 | 148.34 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 674 | 148.71 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 717 | 148.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 817 | 149.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 825 | 149.03 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 854 | 149.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 918 | 149.29 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 945 | 149.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 973 | 149.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |