BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0394900 Os03g0394900|AK103693
(362 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G15730.1 | chr2:6849797-6851881 FORWARD LENGTH=345 427 e-120
AT4G34420.1 | chr4:16458430-16460526 FORWARD LENGTH=343 412 e-115
AT3G50620.1 | chr3:18784993-18786747 REVERSE LENGTH=341 402 e-112
>AT2G15730.1 | chr2:6849797-6851881 FORWARD LENGTH=345
Length = 344
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/334 (59%), Positives = 254/334 (76%)
Query: 28 KDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIEVAEQLCNKS 87
KD+ + K KKSPL LR VV M+C ++IC++C+KQ+G + + +EV E+ C +
Sbjct: 10 KDSFVFKLPKKSPLVLRTVVLLFVMVCTVYICSICLKQIGVVPSAGFLNVEVFERPCPEP 69
Query: 88 AILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSNGEI 147
I ++ +VHYP+P TYSR EC C PVR+FAI+S QRSGSGWFETLLN+H N+SSNGEI
Sbjct: 70 NIQPWDIPYVHYPKPKTYSREECSCNPVRYFAILSMQRSGSGWFETLLNNHTNISSNGEI 129
Query: 148 FSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIADYFN 207
FS K+RR+N+S+I +TLDKVYNLDW SSASKNECT+AVGLKWMLNQGL+ NH +I +YF
Sbjct: 130 FSVKDRRANVSTIFETLDKVYNLDWLSSASKNECTSAVGLKWMLNQGLMKNHEEIVEYFK 189
Query: 208 RRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRLNTT 267
RGVSAIFLFR NLLR+++S LAN++DR K LNGTHK+HVH+ EA ILARYKP +NT+
Sbjct: 190 TRGVSAIFLFRRNLLRRMISVLANSYDRDAKPLNGTHKSHVHSPKEAEILARYKPLINTS 249
Query: 268 SLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPRSKLVSRHVK 327
LI LKQV + T AL + HI +YYED+++NRTKL DV +FLKVP+ L SR VK
Sbjct: 250 LLIPDLKQVQEMTSKALAYFNTTRHIFLYYEDVVKNRTKLDDVQEFLKVPKLDLKSRQVK 309
Query: 328 IHTKPLSEQIENWDEVYNALNGTQYESFLNADYR 361
IH PLS+ ++NW+EV L GT +E+FL DYR
Sbjct: 310 IHHGPLSQHVQNWEEVQKTLKGTGFENFLLEDYR 343
>AT4G34420.1 | chr4:16458430-16460526 FORWARD LENGTH=343
Length = 342
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 251/336 (74%)
Query: 25 FGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIEVAEQLC 84
F KD ++K KKS L LRMVV M+C ++IC++C+KQ+G + +EV E+ C
Sbjct: 7 FLPKDGFVLKLPKKSSLVLRMVVLLFVMVCAVYICSICLKQIGVSPNYGFLNVEVFERPC 66
Query: 85 NKSAILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSN 144
+ I ++ FVHYP+P TY+R EC C PVR+FAI+S QRSGSGWFETLLN+H N+SSN
Sbjct: 67 PEPNIEPWDIPFVHYPKPKTYNRDECSCHPVRYFAILSMQRSGSGWFETLLNNHTNISSN 126
Query: 145 GEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIAD 204
GEIFS K+RR+N+S+I +TLDKVYNLDW SSASKNECT+AVG KWMLNQGL+ +H +I +
Sbjct: 127 GEIFSVKDRRANVSTIFETLDKVYNLDWLSSASKNECTSAVGFKWMLNQGLMKHHEEIVE 186
Query: 205 YFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRL 264
YF RGVSAIFLFR NLLR+++S LAN++DR K LNGTHK+H H+A EA ILA YKP +
Sbjct: 187 YFKTRGVSAIFLFRKNLLRRMISVLANSYDRDAKLLNGTHKSHTHSAKEAEILAGYKPMI 246
Query: 265 NTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPRSKLVSR 324
NTT LI L+Q+ + T AL + HI +YYED+++N T+L DV +FLKVP+ KL SR
Sbjct: 247 NTTLLINELRQIQEMTLKALTYFNTTRHILVYYEDVVKNLTRLDDVQEFLKVPKRKLKSR 306
Query: 325 HVKIHTKPLSEQIENWDEVYNALNGTQYESFLNADY 360
VKIH LS+ ++NW+EV L GT +E+FL+ ++
Sbjct: 307 QVKIHGGSLSKHVQNWEEVMTTLKGTNFENFLHQEF 342
>AT3G50620.1 | chr3:18784993-18786747 REVERSE LENGTH=341
Length = 340
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/345 (56%), Positives = 247/345 (71%), Gaps = 10/345 (2%)
Query: 19 DWWCYQFGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIE 78
++ C + A+++K KKSPL LRM+V M+CG++IC +C+KQL + S
Sbjct: 3 EYICLFGKDSAAIVIKQPKKSPLFLRMIVLVFAMVCGLYICAVCLKQLSNVSFQ------ 56
Query: 79 VAEQLCNKSAILHSEVHFV---HYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLL 135
QL S I + FV HYP+P T++R+EC PVR+FAI+S QRSGSGWFETLL
Sbjct: 57 -TSQLVQTSPIDSHSLRFVTRIHYPKPQTFNRAECGHNPVRYFAILSMQRSGSGWFETLL 115
Query: 136 NSHMNVSSNGEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGL 195
NSH NVSSNGEIFS +RR NISSI +TLD+VYNLDW +SASKNEC+AA+G KWMLNQGL
Sbjct: 116 NSHNNVSSNGEIFSVLDRRKNISSIIQTLDRVYNLDWFTSASKNECSAAIGFKWMLNQGL 175
Query: 196 VANHADIADYFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEAS 255
+ NH DI +YFNRRGVSAIFLFR N LR++VS LAN++DRY K LNGTHK+HVH+ EA
Sbjct: 176 LENHKDIVEYFNRRGVSAIFLFRRNPLRRMVSVLANSYDRYAKLLNGTHKSHVHSPAEAD 235
Query: 256 ILARYKPRLNTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLK 315
L+RYKP +N+TSLI L++ ++ ALE + HI ++YEDLI N+T L V +FL
Sbjct: 236 ALSRYKPVINSTSLIHDLQETENSAAKALEYFNTTRHIVVFYEDLITNQTTLKQVQEFLN 295
Query: 316 VPRSKLVSRHVKIHTKPLSEQIENWDEVYNALNGTQYESFLNADY 360
+P L SR VKIH LS+ I+NW+++ LNGT+YE FL ADY
Sbjct: 296 IPVKDLSSRQVKIHRGDLSDHIKNWEDINKTLNGTEYEKFLRADY 340
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,034,484
Number of extensions: 271315
Number of successful extensions: 773
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,364,969
Effective search space: 2191621878
Effective search space used: 2191621878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)