BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0394900 Os03g0394900|AK103693
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0394900 Conserved hypothetical protein 718 0.0
Os07g0644200 Similar to NodH (Fragment) 376 e-104
Os03g0363950 Conserved hypothetical protein 368 e-102
Os01g0784600 Conserved hypothetical protein 328 3e-90
>Os03g0394900 Conserved hypothetical protein
Length = 362
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 19 DWWCYQFGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIE 78
DWWCYQFGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIE
Sbjct: 19 DWWCYQFGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIE 78
Query: 79 VAEQLCNKSAILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSH 138
VAEQLCNKSAILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSH
Sbjct: 79 VAEQLCNKSAILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSH 138
Query: 139 MNVSSNGEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVAN 198
MNVSSNGEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVAN
Sbjct: 139 MNVSSNGEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVAN 198
Query: 199 HADIADYFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILA 258
HADIADYFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILA
Sbjct: 199 HADIADYFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILA 258
Query: 259 RYKPRLNTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPR 318
RYKPRLNTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPR
Sbjct: 259 RYKPRLNTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPR 318
Query: 319 SKLVSRHVKIHTKPLSEQIENWDEVYNALNGTQYESFLNADYRI 362
SKLVSRHVKIHTKPLSEQIENWDEVYNALNGTQYESFLNADYRI
Sbjct: 319 SKLVSRHVKIHTKPLSEQIENWDEVYNALNGTQYESFLNADYRI 362
>Os07g0644200 Similar to NodH (Fragment)
Length = 337
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/330 (54%), Positives = 237/330 (71%), Gaps = 2/330 (0%)
Query: 33 VKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIEV-AEQLCNKSAILH 91
+KSSK +P R ++ + I G ++C + Q+ ++ S EV AE C K + H
Sbjct: 6 LKSSKGAPFPPRPILVFLIAIFGFYVCYISFNQITLENRSEENSGEVQAEIHCRKPHLPH 65
Query: 92 SEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSNGEIFSSK 151
E+ +VH+P+P +YSR EC C VR F ++S QRSGSGWFETLLNSH N+SSNGEIF+
Sbjct: 66 EELRYVHFPKPESYSRGECSCNLVRSFVLVSMQRSGSGWFETLLNSHPNISSNGEIFNRV 125
Query: 152 ERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIADYFNRRGV 211
+RR NISSI +TLDK+YNLDW +SA+KNECTAA GLKWMLNQG + +H DIA Y N++GV
Sbjct: 126 DRRENISSILQTLDKLYNLDWFTSAAKNECTAAFGLKWMLNQGFMDHHDDIASYLNKKGV 185
Query: 212 SAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRLNTTSLIR 271
S IFLFR N LR+L+S LAN++DR KQLNGTHK+HVH+ EA ILA++KP L+ ++LI
Sbjct: 186 SVIFLFRRNTLRRLISVLANDYDRDAKQLNGTHKSHVHSKEEAEILAKFKPVLDVSNLIP 245
Query: 272 SLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPRSKLVSRHVKIHTK 331
+++ + Y RD L++ + H+ +YYED++RNR L V +FL VP KLVSR VKIHT
Sbjct: 246 NIRNAEKYIRDCLDHFNTTRHMILYYEDIVRNRNALFQVQEFLGVPVRKLVSRQVKIHTS 305
Query: 332 PLSEQIENWDEVYNALNGTQYESFLN-ADY 360
PL + NWD+V N LNGTQY FL+ ADY
Sbjct: 306 PLPGLVRNWDDVSNKLNGTQYAHFLDGADY 335
>Os03g0363950 Conserved hypothetical protein
Length = 366
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/340 (51%), Positives = 239/340 (70%), Gaps = 6/340 (1%)
Query: 25 FGNKDALIVKSSKKSPLALRMVVFAMTMICGIFICTMCMKQLGSDSLSRIVKIEVAEQ-- 82
F N +KS K LR ++ + + G ++C Q+ ++ ++ E EQ
Sbjct: 27 FSNPSVYALKSPKGPLFPLRSILVFLIALFGFYVCYFSFNQIDLENKENLISGE--EQIR 84
Query: 83 -LCNKSAILHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNV 141
LC + I + + +VH+P+P +YSR EC CTPVRFF IIS QRSGSGWFETLLNSH NV
Sbjct: 85 TLCRRHTIPNELMQYVHFPKPTSYSRGECACTPVRFFVIISMQRSGSGWFETLLNSHPNV 144
Query: 142 SSNGEIFSSKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHAD 201
SSNGEIFS +ERR +ISSI +TLDK+YNLDW++SA+KNECTAA GLKWMLNQG++ ++ D
Sbjct: 145 SSNGEIFSIRERREDISSILRTLDKLYNLDWHTSAAKNECTAAFGLKWMLNQGIMEHYHD 204
Query: 202 IADYFNRRGVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYK 261
I +Y N++GV IFLFR N LR+++S LAN++DR KQLNGTHKAHVH+ EA ILAR+K
Sbjct: 205 IVNYLNKKGVMVIFLFRRNTLRRIISVLANDYDRKTKQLNGTHKAHVHSREEADILARFK 264
Query: 262 PRLNTTSLIRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRTKLLDVLDFLKVPRSKL 321
P+L+ +LI +++ + L++ S H+ +YYED+IR++ L V +FL VP +L
Sbjct: 265 PKLDVPTLIPNIRSAEQSITTCLDHFSSTRHMILYYEDVIRDQNALSRVQEFLGVPAMRL 324
Query: 322 VSRHVKIHTKPLSEQIENWDEVYNALNGTQYESFLN-ADY 360
SRHVKIHT PL + ++NW+EV LNGT+Y F++ ADY
Sbjct: 325 SSRHVKIHTSPLPDLVDNWEEVSEKLNGTEYARFVDGADY 364
>Os01g0784600 Conserved hypothetical protein
Length = 346
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/276 (58%), Positives = 200/276 (72%), Gaps = 6/276 (2%)
Query: 34 KSSKKSPLALRMVVFAMTMICGIFICTMCMKQ----LGSDSLSRIVKIEVAEQLCNKSAI 89
KS+++ PL + A+ + G++I ++ +KQ LG I K E+LC +I
Sbjct: 32 KSTRRYPLLSWTTILALIALVGVYIFSVSLKQNGMLLGLKQTDMIEKER--EKLCQDPSI 89
Query: 90 LHSEVHFVHYPQPITYSRSECKCTPVRFFAIISSQRSGSGWFETLLNSHMNVSSNGEIFS 149
+E+ +VHYP P TYSR EC CTPVRFFAI+S QRSGSGW ETLLNSH N+SSNGEIFS
Sbjct: 90 PVTEIPYVHYPTPDTYSRKECACTPVRFFAILSMQRSGSGWIETLLNSHENISSNGEIFS 149
Query: 150 SKERRSNISSITKTLDKVYNLDWNSSASKNECTAAVGLKWMLNQGLVANHADIADYFNRR 209
KERRSNI+SITKTLDK+YNLDW SSA+KNECTAAVGLKWMLNQGLV +H ++ +YFNRR
Sbjct: 150 IKERRSNITSITKTLDKLYNLDWLSSAAKNECTAAVGLKWMLNQGLVQHHEEVVEYFNRR 209
Query: 210 GVSAIFLFRWNLLRQLVSQLANNHDRYLKQLNGTHKAHVHTAYEASILARYKPRLNTTSL 269
GVSAIFL R N L++ VS LAN HD KQ+NGTHK+HVH+ EA ILA++KP ++T L
Sbjct: 210 GVSAIFLLRRNTLQRYVSVLANAHDSKAKQINGTHKSHVHSEREAQILAQFKPEIDTKKL 269
Query: 270 IRSLKQVDDYTRDALENLKSINHITIYYEDLIRNRT 305
I LK+ D DAL K HI +YYED++ N T
Sbjct: 270 IADLKKSDKLAADALLYFKKTRHIILYYEDVVSNDT 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,300,868
Number of extensions: 377959
Number of successful extensions: 1028
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 4
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)