BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0643800 Os07g0643800|AK103858
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0643800 Similar to Dirigent protein 296 7e-81
Os07g0636600 Plant disease resistance response protein fami... 219 1e-57
Os07g0636800 Plant disease resistance response protein fami... 183 9e-47
Os07g0643900 182 1e-46
Os07g0636700 182 2e-46
Os07g0638500 Similar to Dirigent-like protein (Fragment) 174 4e-44
Os07g0637700 Plant disease resistance response protein fami... 157 8e-39
Os07g0637800 92 3e-19
>Os07g0643800 Similar to Dirigent protein
Length = 214
Score = 296 bits (758), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/214 (72%), Positives = 155/214 (72%)
Query: 1 LSLDNSARAPDGYLVHGVSDDRRRHHLPAQPHLGXXXXXXXXXXXXXXXXXXXAVHGDEA 60
LSLDNSARAPDGYLVHGVSDDRRRHHLPAQPHLG AVHGDEA
Sbjct: 1 LSLDNSARAPDGYLVHGVSDDRRRHHLPAQPHLGERRRPWPEQQEEVRQELRRAVHGDEA 60
Query: 61 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVQRPVTEGRALPPSLE 120
V GGGVQRPVTEGRALPPSLE
Sbjct: 61 VPPRHPLRLQQQHLQLHGGGGHQADGAGQRRAVDRRHLLRRGGGVQRPVTEGRALPPSLE 120
Query: 121 ETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGTGD 180
ETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGTGD
Sbjct: 121 ETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGTGD 180
Query: 181 FFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
FFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV
Sbjct: 181 FFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
>Os07g0636600 Plant disease resistance response protein family protein
Length = 204
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/107 (97%), Positives = 106/107 (99%)
Query: 108 PVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAE 167
P+TEGRALPPSLEETAVRAQG+YLYNSKEAFNAW AFSIVFNSTGRRGTLNLMGADIIAE
Sbjct: 97 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFNAWFAFSIVFNSTGRRGTLNLMGADIIAE 156
Query: 168 KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV
Sbjct: 157 KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 203
>Os07g0636800 Plant disease resistance response protein family protein
Length = 202
Score = 183 bits (464), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/107 (84%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Query: 108 PVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAE 167
PVTEGRALPPSLEET VRAQGLYLY+ K F+AW AF++VFNST GTLNLMGAD E
Sbjct: 97 PVTEGRALPPSLEETVVRAQGLYLYDGKVVFDAWFAFTVVFNSTAHHGTLNLMGADPNTE 156
Query: 168 KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
RDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV
Sbjct: 157 -MRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 202
>Os07g0643900
Length = 207
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 100/111 (90%), Gaps = 4/111 (3%)
Query: 108 PVTEG-RALPP--SLEETAV-RAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGAD 163
P+TEG RALPP SL ETA RAQG+YLY+SKE ++AW AFS+VFNSTGRRGTLNLMGAD
Sbjct: 97 PMTEGTRALPPPSSLRETAAARAQGVYLYDSKEVYDAWFAFSVVFNSTGRRGTLNLMGAD 156
Query: 164 IIAEKTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
+++EKTRDISVVGGTGDFFMSRGVATLRTDA EG YFRLQMDIKLYECY+
Sbjct: 157 LMSEKTRDISVVGGTGDFFMSRGVATLRTDAVEGLVYFRLQMDIKLYECYI 207
>Os07g0636700
Length = 154
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/107 (84%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
Query: 108 PVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAE 167
P+TEGRALPPSLEETAVRAQGLYL + K+ F+AW AFSIVFNST RRGTLNLMGAD A
Sbjct: 49 PMTEGRALPPSLEETAVRAQGLYLLDKKDDFSAWFAFSIVFNSTARRGTLNLMGADPNA- 107
Query: 168 KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
TRDISVVGGTGDF MSRGVATLRTDA EGF YFR+QMDIKLYECYV
Sbjct: 108 ATRDISVVGGTGDFLMSRGVATLRTDAIEGFKYFRVQMDIKLYECYV 154
>Os07g0638500 Similar to Dirigent-like protein (Fragment)
Length = 205
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 98/111 (88%), Gaps = 4/111 (3%)
Query: 108 PVTEGRALPPSL---EETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADI 164
P+TEGRALPPS EETAVRAQG+YLY+ KEA NAW AFS+VFNSTGRRGTLNLMGAD+
Sbjct: 95 PMTEGRALPPSPAMEEETAVRAQGVYLYDKKEAPNAWFAFSVVFNSTGRRGTLNLMGADL 154
Query: 165 IAEKTRDISVVGGTGDFFMSRGVATLRTD-AFEGFTYFRLQMDIKLYECYV 214
++EKTRD+SVVGGTGDFFMSRGVATL TD A +YFR+++DIKLYECYV
Sbjct: 155 MSEKTRDLSVVGGTGDFFMSRGVATLSTDEASADLSYFRVKVDIKLYECYV 205
>Os07g0637700 Plant disease resistance response protein family protein
Length = 229
Score = 157 bits (396), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Query: 108 PVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAE 167
P+TEGRALPPSLEETAVRAQGLYL + K+ F+AW AFSIVFNST RRGTLNLMGAD A
Sbjct: 95 PMTEGRALPPSLEETAVRAQGLYLLDKKDDFSAWFAFSIVFNSTARRGTLNLMGADPNA- 153
Query: 168 KTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRL 203
TRDISVVGGTGDF MSRGVATLRTDA EGF YFR
Sbjct: 154 ATRDISVVGGTGDFLMSRGVATLRTDAIEGFKYFRF 189
>Os07g0637800
Length = 163
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 52/60 (86%), Gaps = 3/60 (5%)
Query: 108 PVTEG-RALPPSLEETAVRAQGLYLYNSKEA--FNAWLAFSIVFNSTGRRGTLNLMGADI 164
P+TEG ALPPSLEETAVRAQGLYLY+ K A NAWLAFS+VFNST RRGTL+LMGA++
Sbjct: 97 PMTEGTSALPPSLEETAVRAQGLYLYDGKAASTLNAWLAFSVVFNSTARRGTLSLMGAEM 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,627,556
Number of extensions: 177189
Number of successful extensions: 362
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 9
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)