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Os07g0643800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dirigent protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.37 (0.0324) R2 : 0.533
β1 : 1.44 (0.118) R2dD : 0.16 R2D : 0.169
β2 : 1.12 (0.0833) R2dC : 0.183 R2C : 0.187
β3 : 1.56 (0.15) R2dE : 0.168 R2E : -0.0467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.93 (0.658) R2dD*E : 0.213 R2D*E : 0.00195
γ1 : -0.148 (0.0704) R2dN8 : 0.00603 R2N8 : 0.0182
σ : 0.599
deviance : 165.24
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C
peak time of C : 6.82
E
wheather : wind
threshold : 5.421
memory length : 3794
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.8
open length of G : 5.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.62 0.601 6.38 1.45 1.11 1.54 -0.823 7.84 -0.145 6.92 5.377 3793 19.8 5.65
205.61 0.668 6.32 1.69 1.13 1.22 0.0765 -- 0.043 6.72 4.965 9705 19.7 4.95
165.24 0.599 6.37 1.44 1.12 1.56 -- 7.93 -0.148 6.82 5.421 3794 19.8 5.85
189.72 0.642 6.33 1.21 1.17 1.34 -- -- -0.124 6.31 10.2 9606 20.2 5.93
229.35 0.705 6.4 1.47 -- 1.69 -- 8.12 -0.112 -- 5.302 3796 19.8 6.1
222.54 0.699 6.35 1.41 1.14 -- -0.52 -- -0.208 6.87 -- -- -- --
223.21 0.7 6.35 1.4 1.13 -- -- -- -0.208 6.8 -- -- -- --
251.66 0.739 6.34 1.54 -- 1.16 -- -- -0.0191 -- 10.2 9667 20 9.03
242.1 0.725 6.33 -- 1.2 1.08 -- -- -0.111 6.72 10.2 9459 20.1 7.08
290.61 0.797 6.38 1.43 -- -- -- -- -0.186 -- -- -- -- --
274.89 0.776 6.39 -- 1.15 -- -- -- -0.364 6.73 -- -- -- --
311.38 0.822 6.33 -- -- 1.02 -- -- -0.118 -- 10.2 9462 20.1 7.35
344.21 0.866 6.41 -- -- -- -- -- -0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.20 atmosphere 1005.0 14400 < th dose independent rect. 23 1
2 167.93 wind 5.0 4320 > th dose dependent rect. 20 5
4 168.94 atmosphere 995.0 14400 > th dose independent rect. 16 2
5 169.00 precipitation 0.1 14400 > th dose dependent rect. 20 3
6 169.10 precipitation 0.1 14400 > th dose dependent rect. 17 1
7 169.11 atmosphere 995.0 14400 > th dose independent rect. 16 4
9 169.26 atmosphere 995.0 14400 < th dose independent rect. 16 1
10 169.28 atmosphere 995.0 14400 < th dose independent rect. 16 3
14 169.30 atmosphere 995.0 14400 < th dose dependent rect. 16 1
15 169.31 atmosphere 995.0 14400 < th dose dependent rect. 16 3
41 169.90 atmosphere 995.0 14400 > th dose independent rect. 12 8
54 170.39 wind 7.0 4320 < th dose independent rect. 20 5
59 170.52 wind 7.0 4320 > th dose independent rect. 20 6
61 170.55 atmosphere 995.0 14400 > th dose independent rect. 8 12
105 171.00 wind 5.0 4320 > th dose independent rect. 20 1
112 171.12 wind 5.0 4320 < th dose independent rect. 20 1
140 172.27 precipitation 0.1 14400 > th dose independent rect. 17 1
171 172.53 atmosphere 995.0 14400 > th dose independent rect. 12 3
174 172.66 atmosphere 1005.0 14400 > th dose independent rect. 23 1
203 173.21 wind 3.0 4320 > th dose dependent rect. 20 1
216 174.08 precipitation 0.1 14400 < th dose independent rect. 17 1
217 174.08 precipitation 0.1 14400 < th dose dependent rect. 17 1
221 174.25 atmosphere 995.0 14400 > th dose independent rect. 12 1
229 174.36 atmosphere 1005.0 43200 < th dose independent rect. 3 1
244 174.57 precipitation 0.1 14400 > th dose independent rect. 21 1
245 174.57 precipitation 0.1 14400 < th dose independent rect. 21 1
246 174.57 precipitation 0.1 14400 < th dose dependent rect. 21 1
262 174.98 atmosphere 1005.0 43200 > th dose independent rect. 3 1
270 175.13 wind 9.0 14400 > th dose independent rect. 4 9
284 175.47 atmosphere 1005.0 14400 > th dose independent rect. 22 5
288 175.56 temperature 25.0 10 < th dose dependent rect. 24 22
366 176.81 radiation 1.0 14400 < th dose dependent rect. 20 5
389 177.27 radiation 1.0 14400 < th dose dependent rect. 20 7
431 177.89 wind 9.0 43200 > th dose dependent rect. 18 3
436 178.03 wind 9.0 14400 < th dose independent rect. 1 12
440 178.12 wind 9.0 14400 > th dose dependent rect. 4 9
495 178.70 atmosphere 1005.0 14400 < th dose independent sin 10 NA
542 179.15 radiation 1.0 14400 < th dose dependent rect. 22 3
549 179.27 temperature 20.0 4320 > th dose independent rect. 21 2
570 179.42 radiation 1.0 14400 < th dose dependent rect. 22 5
606 179.79 atmosphere 1005.0 14400 > th dose independent rect. 21 16
617 179.91 atmosphere 1005.0 14400 > th dose independent sin 9 NA
640 180.07 atmosphere 1005.0 43200 > th dose independent rect. 11 1
685 180.47 wind 9.0 43200 > th dose independent rect. 18 3
694 180.55 atmosphere 1005.0 43200 < th dose independent rect. 11 1
697 180.56 wind 1.0 43200 > th dose dependent rect. 1 1
876 181.91 wind 9.0 43200 > th dose dependent rect. 18 7
903 182.06 temperature 20.0 4320 < th dose independent rect. 21 2
935 182.34 wind 9.0 43200 > th dose dependent rect. 18 10
944 182.38 temperature 20.0 270 > th dose independent rect. 4 22
989 182.63 humidity 80.0 1440 > th dose dependent rect. 2 7