BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0643800 Os07g0643800|AK103858
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64160.1 | chr1:23814063-23814611 FORWARD LENGTH=183 137 3e-33
AT4G23690.1 | chr4:12339152-12339715 REVERSE LENGTH=188 136 7e-33
AT4G11190.1 | chr4:6826682-6827236 FORWARD LENGTH=185 122 1e-28
AT4G11210.1 | chr4:6832691-6833245 FORWARD LENGTH=185 115 2e-26
AT4G11180.1 | chr4:6820049-6820606 FORWARD LENGTH=186 111 2e-25
AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194 50 9e-07
AT2G21100.1 | chr2:9048687-9049336 REVERSE LENGTH=188 49 2e-06
AT1G58170.1 | chr1:21536188-21536745 FORWARD LENGTH=186 47 5e-06
>AT1G64160.1 | chr1:23814063-23814611 FORWARD LENGTH=183
Length = 182
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 74/94 (78%)
Query: 120 EETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGTG 179
E RAQG Y Y+ K +NAW A+++VFNST +GTLN+MGAD++ ++RD+SVVGGTG
Sbjct: 89 SEPVARAQGFYFYDMKNDYNAWFAYTLVFNSTQHKGTLNIMGADLMMVQSRDLSVVGGTG 148
Query: 180 DFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECY 213
DFFMSRG+ T TD FEG YFR++MDIKLYECY
Sbjct: 149 DFFMSRGIVTFETDTFEGAKYFRVKMDIKLYECY 182
>AT4G23690.1 | chr4:12339152-12339715 REVERSE LENGTH=188
Length = 187
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 76/95 (80%)
Query: 119 LEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGT 178
L + RAQG Y Y+ K FN+W ++++VFNST +GTLN+MGAD++ E TRD+SVVGGT
Sbjct: 93 LSKPVARAQGFYFYDMKMDFNSWFSYTLVFNSTEHKGTLNIMGADLMMEPTRDLSVVGGT 152
Query: 179 GDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECY 213
GDFFM+RG+AT TD F+G YFR++MDIKLYECY
Sbjct: 153 GDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY 187
>AT4G11190.1 | chr4:6826682-6827236 FORWARD LENGTH=185
Length = 184
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Query: 105 VQRPVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADI 164
+ PVT + + L E R QG + Y+ K ++ WL++S+VFNST +G LN+MG +
Sbjct: 78 MDNPVTMDQNM---LSEQVARVQGFFFYHGKTKYDTWLSWSVVFNSTQHKGALNIMGENA 134
Query: 165 IAEKTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECY 213
E TRD+ VVGGTGDF M+RG+AT TD EG YFR++MDIKLYECY
Sbjct: 135 FMEPTRDLPVVGGTGDFVMTRGIATFMTDLVEGSKYFRVKMDIKLYECY 183
>AT4G11210.1 | chr4:6832691-6833245 FORWARD LENGTH=185
Length = 184
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 119 LEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADIIAEKTRDISVVGGT 178
L + R QG + Y+ K ++AW+A+++VFNST +G +MG + E TRD+ +VGGT
Sbjct: 89 LSKPVARVQGFFCYHGKATYDAWIAWTVVFNSTQHKGAFTIMGENPFMEPTRDLPIVGGT 148
Query: 179 GDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECY 213
GDF M+RG+ATL TD +G YFR+++DIKLYECY
Sbjct: 149 GDFIMTRGIATLTTDHIDGSKYFRVKLDIKLYECY 183
>AT4G11180.1 | chr4:6820049-6820606 FORWARD LENGTH=186
Length = 185
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 73/110 (66%), Gaps = 4/110 (3%)
Query: 105 VQRPVTEGRALPPSLEETAVRAQGLYLYNSKEAFNAWLAFSIVFNSTGRRGTLNLMGADI 164
+ PVT + L + RAQG Y YN K +NAW+A+++VFNST +GT +M A+
Sbjct: 79 INNPVTLDQNY---LSKPVARAQGFYFYNMKTNYNAWVAWTLVFNSTKHKGTFTIMDANP 135
Query: 165 IA-EKTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECY 213
+ RD+S+VGGTGDF M+RG+AT +T +G YF ++M+IKLYECY
Sbjct: 136 FGLQPARDLSIVGGTGDFLMTRGIATFKTKLTQGSKYFCVEMNIKLYECY 185
>AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194
Length = 193
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 105 VQRPVTEGRALPPSLEETAV-RAQGLYLYNSKEAFNAWLAFSIVFNSTGRRG-TLNLMGA 162
V PVTEG P L V RAQGLY + F + F+ VF G T L G
Sbjct: 90 VDAPVTEG----PELSSKEVGRAQGLYASTDMKTFGFTMVFNFVFTEGEFNGSTAALYGR 145
Query: 163 DIIAEKTRDISVVGGTGDFFMSRGVATLRT 192
+ I + R++ ++GGTGDF +RG A +T
Sbjct: 146 NPILLEERELPIIGGTGDFRFARGYALPKT 175
>AT2G21100.1 | chr2:9048687-9049336 REVERSE LENGTH=188
Length = 187
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 125 RAQGLYLYNSKEAFNAWLAFSIVF-NSTGRRGTLNLMGADIIAEKTRDISVVGGTGDFFM 183
RAQGLY + KE +A S F + + T++++G + R++ +VGGTG F M
Sbjct: 99 RAQGLYGSSCKEEVGLIMAMSFCFEDGPYKDSTISMIGKNSAMNPIREMPIVGGTGMFRM 158
Query: 184 SRGVATLRTDAFE 196
+RG A RT+ F+
Sbjct: 159 ARGYAIARTNWFD 171
>AT1G58170.1 | chr1:21536188-21536745 FORWARD LENGTH=186
Length = 185
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 102 GGGVQRPVTEGRALPPSLEETAV-RAQGLYLYNSKEAFNAWLAFSI-VFNSTGRRGTLNL 159
G G+ R + L P L V RAQG Y SKE +A + + + T+ +
Sbjct: 72 GFGLMRMIDNPLTLTPKLSSKMVGRAQGFYAGTSKEEIGLLMAMNFAILDGKYNGSTITV 131
Query: 160 MGADIIAEKTRDISVVGGTGDFFMSRGVATLRTDAFEGFTYFRLQMDIKLYECYV 214
+G + + +K R++ V+GG+G F +RG T F + I Y CY+
Sbjct: 132 LGRNSVFDKVREMPVIGGSGLFRFARGYVQASTHEFN----LKTGNAIVEYNCYL 182
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,362,194
Number of extensions: 102499
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 10
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)