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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0636600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0518) R2 : 0.0726
β1 : 0.449 (0.184) R2dD : 0.0133 R2D : -0.00345
β2 : -- (--) R2dC : -- R2C : --
β3 : 13.1 (2.41) R2dE : 1.26 R2E : -1.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 27.5 (5.05) R2dD*E : 1.27 R2D*E : -1.15
γ1 : 0.145 (0.105) R2dN8 : 0.0052 R2N8 : -0.00811
σ : 0.919
deviance : 385.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.62
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.6 0.921 3.01 0.38 0.0248 9.42 0.89 19.8 0.149 14.5 19.02 3 20.3 --
408.96 0.949 2.92 0.333 0.00367 0.57 0.585 -- 0.17 13.5 20.8 2 23.8 --
385.59 0.922 3.02 0.443 0.00973 12.6 -- 26.6 0.145 18.5 18.66 3 19.7 --
410.3 0.95 2.92 0.355 0.0102 0.595 -- -- 0.174 10.8 20.7 2 0.121 --
385.54 0.919 3.02 0.449 -- 13.1 -- 27.5 0.145 -- 18.62 3 19.7 --
411.56 0.951 2.93 0.259 0.0497 -- -0.622 -- 0.129 1.78 -- -- -- --
413.05 0.952 2.93 0.278 0.0548 -- -- -- 0.132 3.23 -- -- -- --
410.3 0.948 2.92 0.354 -- 0.591 -- -- 0.174 -- 20.7 2 0.0899 --
413.44 0.952 2.93 -- 0.0186 0.448 -- -- 0.127 4.73 20.7 2 0.121 --
413.22 0.95 2.93 0.28 -- -- -- -- 0.134 -- -- -- -- --
415.09 0.953 2.94 -- 0.0603 -- -- -- 0.101 3.23 -- -- -- --
413.46 0.95 2.93 -- -- 0.458 -- -- 0.127 -- 20.7 2 0.121 --
415.3 0.951 2.94 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 383.33 temperature 30.0 10 > th dose independent rect. 14 1
5 385.00 wind 1.0 90 < th dose dependent rect. 13 1
12 387.39 temperature 30.0 10 > th dose independent rect. 13 5
13 387.98 temperature 30.0 10 > th dose independent rect. 13 21
16 388.93 wind 1.0 90 < th dose independent rect. 13 1
32 389.02 temperature 20.0 10 < th dose dependent rect. 2 4
39 389.79 temperature 20.0 10 < th dose dependent rect. 2 8
107 393.04 humidity 90.0 90 > th dose independent rect. 14 1
110 393.04 humidity 90.0 90 > th dose dependent rect. 14 1
122 393.30 radiation 1.0 10 < th dose independent rect. 11 5
126 393.31 radiation 1.0 10 < th dose independent rect. 13 3
128 393.32 radiation 1.0 10 < th dose independent rect. 15 1
166 394.00 temperature 25.0 10 > th dose dependent rect. 22 2
183 394.62 temperature 25.0 30 > th dose independent rect. 22 2
184 394.79 temperature 20.0 270 < th dose dependent rect. 1 3
186 394.82 temperature 20.0 10 < th dose dependent sin 3 NA
192 395.30 radiation 1.0 10 < th dose dependent rect. 15 1
195 395.40 humidity 90.0 90 < th dose independent rect. 2 4
224 396.00 radiation 10.0 90 < th dose dependent rect. 14 1
277 397.08 temperature 30.0 10 < th dose independent rect. 23 23
284 397.63 temperature 25.0 720 > th dose dependent rect. 18 5
293 397.85 humidity 90.0 90 < th dose independent rect. 2 1
307 397.98 wind 3.0 90 > th dose independent rect. 2 4
329 398.30 temperature 25.0 90 < th dose dependent rect. 14 1
335 398.50 humidity 50.0 30 > th dose independent rect. 23 23
354 398.89 temperature 20.0 270 < th dose independent rect. 24 3
355 398.94 humidity 50.0 720 > th dose independent rect. 23 16
358 398.99 temperature 30.0 720 < th dose independent rect. 3 8
368 399.19 precipitation 0.1 1440 < th dose independent rect. 23 1
369 399.19 precipitation 0.1 1440 < th dose dependent rect. 23 1
375 399.27 temperature 20.0 270 < th dose independent rect. 1 1
389 399.47 humidity 50.0 720 > th dose independent rect. 3 8
396 399.54 wind 1.0 43200 < th dose dependent rect. 19 3
402 399.62 atmosphere 995.0 4320 > th dose independent rect. 23 1
414 399.84 atmosphere 995.0 720 > th dose independent rect. 11 16
416 399.86 temperature 30.0 720 < th dose independent rect. 17 8
423 400.02 temperature 30.0 1440 < th dose independent rect. 17 5
433 400.11 temperature 30.0 1440 < th dose independent rect. 17 13
435 400.13 temperature 30.0 1440 < th dose independent rect. 17 10
436 400.14 radiation 1.0 14400 < th dose dependent rect. 23 1
453 400.32 temperature 10.0 720 > th dose independent rect. 3 8
454 400.32 atmosphere 995.0 720 > th dose independent rect. 3 8
455 400.32 atmosphere 995.0 720 > th dose independent rect. 15 8
456 400.32 temperature 10.0 720 > th dose independent rect. 11 16
476 400.52 wind 9.0 4320 < th dose independent rect. 23 1
481 400.56 temperature 30.0 10 < th dose independent sin 14 NA
484 400.58 radiation 1.0 10 < th dose independent rect. 6 11
487 400.59 atmosphere 995.0 720 > th dose independent rect. 23 16
495 400.65 temperature 30.0 1440 > th dose independent rect. 17 2
511 400.66 temperature 30.0 720 > th dose independent rect. 12 1
518 400.71 temperature 10.0 720 > th dose independent rect. 15 8
527 400.71 temperature 10.0 720 > th dose independent rect. 23 16
534 400.72 temperature 10.0 1440 > th dose independent rect. 23 1
537 400.72 temperature 30.0 1440 < th dose independent rect. 23 1
541 400.72 humidity 50.0 1440 > th dose independent rect. 23 1
552 400.72 radiation 1.0 1440 < th dose independent rect. 23 1
573 400.72 temperature 10.0 1440 > th dose independent rect. 24 23
585 400.74 precipitation 0.1 720 < th dose independent rect. 3 8
587 400.74 precipitation 0.1 720 < th dose dependent rect. 3 8
589 400.76 temperature 30.0 10 > th dose independent sin 15 NA
597 400.79 precipitation 0.1 30 < th dose independent rect. 23 23
598 400.79 precipitation 0.1 30 < th dose dependent rect. 23 23
600 400.80 humidity 90.0 30 < th dose independent rect. 22 1
607 400.83 temperature 25.0 720 > th dose independent rect. 20 3
610 400.85 wind 3.0 30 < th dose independent rect. 22 1
613 400.87 humidity 80.0 30 > th dose independent rect. 22 1
616 400.88 atmosphere 1005.0 30 > th dose dependent rect. 22 1
622 400.91 wind 5.0 30 < th dose dependent rect. 22 1
623 400.91 radiation 40.0 43200 < th dose dependent rect. 23 1
630 400.94 atmosphere 1000.0 30 > th dose independent rect. 22 1
633 400.94 atmosphere 1000.0 30 > th dose independent rect. 23 23
646 400.97 wind 3.0 720 < th dose independent rect. 11 2
651 400.98 wind 1.0 30 > th dose independent rect. 22 1
655 400.99 precipitation 0.1 30 < th dose independent rect. 22 1
657 400.99 precipitation 0.1 30 < th dose dependent rect. 22 1
661 401.00 temperature 10.0 30 > th dose independent rect. 22 1
663 401.00 temperature 30.0 30 < th dose independent rect. 22 1
664 401.00 humidity 50.0 30 > th dose independent rect. 22 1
668 401.00 atmosphere 1010.0 30 < th dose independent rect. 22 1
670 401.00 radiation 1.0 30 < th dose independent rect. 22 1
676 401.00 temperature 10.0 30 > th dose independent rect. 23 23
677 401.00 radiation 1.0 30 < th dose dependent rect. 22 1
687 401.02 humidity 50.0 30 > th dose dependent rect. 22 1
706 401.03 humidity 90.0 30 < th dose dependent rect. 22 1
737 401.15 atmosphere 1015.0 30 < th dose dependent rect. 22 1
742 401.19 temperature 30.0 30 < th dose dependent rect. 22 1
752 401.22 wind 1.0 30 > th dose dependent rect. 22 1
762 401.26 wind 3.0 720 < th dose dependent rect. 11 2
763 401.26 radiation 1.0 10 < th dose dependent rect. 6 11
769 401.29 atmosphere 995.0 90 > th dose dependent rect. 23 22
780 401.34 temperature 25.0 720 > th dose independent rect. 22 1
792 401.39 wind 1.0 43200 < th dose independent rect. 19 3
797 401.41 wind 9.0 720 < th dose independent rect. 3 8
815 401.47 temperature 20.0 90 > th dose dependent rect. 21 10
828 401.55 temperature 25.0 10 < th dose independent rect. 14 2
845 401.59 temperature 30.0 720 < th dose dependent rect. 18 8
883 401.64 wind 1.0 270 < th dose dependent rect. 10 10
900 401.70 temperature 25.0 270 < th dose dependent rect. 22 9
902 401.72 wind 1.0 270 < th dose independent rect. 10 10
953 401.88 precipitation 0.1 720 < th dose independent rect. 23 16
954 401.88 precipitation 0.1 720 < th dose dependent rect. 23 16
983 401.97 wind 9.0 720 < th dose dependent rect. 11 2
992 402.00 atmosphere 1005.0 90 < th dose dependent rect. 5 1
996 402.01 wind 1.0 90 < th dose dependent rect. 16 2