Os07g0637700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os07g0637700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.88 | 0.804 | 2.79 | 1.41 | 0.282 | -0.383 | -0.501 | 8.05 | -0.0905 | 3.2 | 30 | 2496 | -- | -- |
| 298.64 | 0.805 | 2.96 | -0.0835 | 0.281 | 0.534 | -0.427 | -- | -0.192 | 3.36 | 29.8 | 4198 | -- | -- |
| 293.3 | 0.798 | 2.79 | 1.38 | 0.286 | -0.379 | -- | 8.05 | -0.0906 | 2.49 | 29.9 | 2428 | -- | -- |
| 298.66 | 0.805 | 2.97 | -0.0758 | 0.267 | 0.429 | -- | -- | -0.228 | 2.08 | 31.4 | 2755 | -- | -- |
| 298.12 | 0.804 | 2.79 | 1.41 | -- | -0.352 | -- | 8.15 | -0.0802 | -- | 29.9 | 2435 | -- | -- |
| 308.88 | 0.824 | 2.98 | 0.0715 | 0.343 | -- | -0.184 | -- | -0.262 | 2.54 | -- | -- | -- | -- |
| 308.97 | 0.823 | 2.98 | 0.0765 | 0.341 | -- | -- | -- | -0.261 | 2.26 | -- | -- | -- | -- |
| 303.01 | 0.811 | 2.96 | -0.0603 | -- | 0.539 | -- | -- | -0.148 | -- | 31.47 | 2744 | -- | -- |
| 298.51 | 0.805 | 2.97 | -- | 0.303 | 0.461 | -- | -- | -0.174 | 1.9 | 31.2 | 2761 | -- | -- |
| 315.9 | 0.831 | 2.98 | 0.0909 | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
| 309.12 | 0.822 | 2.98 | -- | 0.343 | -- | -- | -- | -0.27 | 2.26 | -- | -- | -- | -- |
| 303.1 | 0.811 | 2.96 | -- | -- | 0.529 | -- | -- | -0.144 | -- | 31.41 | 2753 | -- | -- |
| 316.12 | 0.83 | 2.98 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.01 | wind | 5.0 | 10 | > th | dose dependent | rect. | 22 | 4 |
| 21 | 281.66 | wind | 5.0 | 10 | > th | dose independent | rect. | 22 | 3 |
| 22 | 281.76 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 2 |
| 33 | 281.84 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 34 | 281.84 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 46 | 281.95 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 2 |
| 47 | 281.95 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 144 | 287.93 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 151 | 288.43 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 24 | 2 |
| 153 | 288.55 | wind | 5.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 154 | 288.58 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 168 | 289.42 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 176 | 289.75 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 178 | 289.79 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 193 | 289.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 241 | 290.48 | wind | 5.0 | 10 | > th | dose independent | rect. | 20 | 6 |
| 245 | 290.56 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 280 | 291.02 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 287 | 291.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 13 |
| 292 | 291.46 | wind | 5.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 307 | 291.80 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 313 | 291.88 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 337 | 292.40 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 338 | 292.40 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 345 | 292.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 346 | 292.58 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 365 | 292.62 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 371 | 292.70 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 419 | 292.89 | radiation | 20.0 | 30 | < th | dose independent | sin | 11 | NA |
| 421 | 292.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 430 | 292.98 | temperature | 30.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 431 | 292.99 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 5 |
| 445 | 293.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 447 | 293.06 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 450 | 293.07 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 22 | 5 |
| 460 | 293.12 | radiation | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 464 | 293.15 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 465 | 293.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 470 | 293.17 | humidity | 80.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 471 | 293.17 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 505 | 293.30 | radiation | 20.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 530 | 293.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 531 | 293.38 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 532 | 293.38 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 539 | 293.42 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 541 | 293.44 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 543 | 293.45 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 2 |
| 622 | 293.72 | temperature | 30.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 630 | 293.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 667 | 293.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 683 | 293.88 | atmosphere | 1010.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 707 | 293.94 | temperature | 30.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 738 | 294.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 746 | 294.01 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 769 | 294.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 819 | 294.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 826 | 294.12 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 828 | 294.12 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 846 | 294.15 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 855 | 294.15 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 894 | 294.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 959 | 294.25 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 21 | 12 |