BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0633600 Os07g0633600|AK067310
(585 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0633600 Conserved hypothetical protein 1061 0.0
Os10g0456400 Conserved hypothetical protein 449 e-126
Os01g0805100 Conserved hypothetical protein 185 6e-47
>Os07g0633600 Conserved hypothetical protein
Length = 585
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/585 (90%), Positives = 532/585 (90%)
Query: 1 MSSSDQDDHDEDAPLFRAXXXXXXXXXXXXXXXXXVGEVPVAQSIIKAASNVCFSLFXXX 60
MSSSDQDDHDEDAPLFRA VGEVPVAQSIIKAASNVCFSLF
Sbjct: 1 MSSSDQDDHDEDAPLFRASSGDDDDHPHPRRRSSPVGEVPVAQSIIKAASNVCFSLFVLA 60
Query: 61 XXXXXXXXXXYQPPDPWLQSSAAITTSLSRVLPNSTFLLPDDSLLPTGEDFNSSSSTPSA 120
YQPPDPWLQSSAAITTSLSRVLPNSTFLLPDDSLLPTGEDFNSSSSTPSA
Sbjct: 61 VLVVTVVAVTYQPPDPWLQSSAAITTSLSRVLPNSTFLLPDDSLLPTGEDFNSSSSTPSA 120
Query: 121 PRRDDPDQXXXXXXXXXVNGTCDPDAPLNCSDPRVLXXXXXXXXXXXXXXSIVFLSYEAP 180
PRRDDPDQ VNGTCDPDAPLNCSDPRVL SIVFLSYEAP
Sbjct: 121 PRRDDPDQATATATAAAVNGTCDPDAPLNCSDPRVLAAVKAFNAKAFFRKSIVFLSYEAP 180
Query: 181 VPGPKPGECDVAWRFRNRREKSWRRYRDYRRFVLVPGDGCALDINRVGKFRSGTNAARPP 240
VPGPKPGECDVAWRFRNRREKSWRRYRDYRRFVLVPGDGCALDINRVGKFRSGTNAARPP
Sbjct: 181 VPGPKPGECDVAWRFRNRREKSWRRYRDYRRFVLVPGDGCALDINRVGKFRSGTNAARPP 240
Query: 241 RQKGSKNRNPRVAPPPVDAEINDTIPIVGSEAEFRRGKYLYYMRGGDHCKSMNQFIWSFL 300
RQKGSKNRNPRVAPPPVDAEINDTIPIVGSEAEFRRGKYLYYMRGGDHCKSMNQFIWSFL
Sbjct: 241 RQKGSKNRNPRVAPPPVDAEINDTIPIVGSEAEFRRGKYLYYMRGGDHCKSMNQFIWSFL 300
Query: 301 CGLGEAKFLNRTFVMDLNMCLSGAHTNNGKDEDGKDFRYYFDFEHLKESVSVVEEGDFLK 360
CGLGEAKFLNRTFVMDLNMCLSGAHTNNGKDEDGKDFRYYFDFEHLKESVSVVEEGDFLK
Sbjct: 301 CGLGEAKFLNRTFVMDLNMCLSGAHTNNGKDEDGKDFRYYFDFEHLKESVSVVEEGDFLK 360
Query: 361 DWKRWDKKKGPGRISVRKVPSYKVTPMQLKRDKSNIIWRLFDGQEPENYWYRVCEGRAAK 420
DWKRWDKKKGPGRISVRKVPSYKVTPMQLKRDKSNIIWRLFDGQEPENYWYRVCEGRAAK
Sbjct: 361 DWKRWDKKKGPGRISVRKVPSYKVTPMQLKRDKSNIIWRLFDGQEPENYWYRVCEGRAAK 420
Query: 421 VIQRPWYAIWKSKRLMNIVTEIAGRMDWDYDGLHVIRGWKAQNKQMYPNLDADTSPEALV 480
VIQRPWYAIWKSKRLMNIVTEIAGRMDWDYDGLHVIRGWKAQNKQMYPNLDADTSPEALV
Sbjct: 421 VIQRPWYAIWKSKRLMNIVTEIAGRMDWDYDGLHVIRGWKAQNKQMYPNLDADTSPEALV 480
Query: 481 DKVPKLIKQPMRNLYIATNEPFYNYFDKLRSYFHVHLLDDYKELWSNTSEWYNETTTLSG 540
DKVPKLIKQPMRNLYIATNEPFYNYFDKLRSYFHVHLLDDYKELWSNTSEWYNETTTLSG
Sbjct: 481 DKVPKLIKQPMRNLYIATNEPFYNYFDKLRSYFHVHLLDDYKELWSNTSEWYNETTTLSG 540
Query: 541 GRPVPFDAYMRVIVDTEVFYRAKTQVETFNNLTRDCKDGINTCNL 585
GRPVPFDAYMRVIVDTEVFYRAKTQVETFNNLTRDCKDGINTCNL
Sbjct: 541 GRPVPFDAYMRVIVDTEVFYRAKTQVETFNNLTRDCKDGINTCNL 585
>Os10g0456400 Conserved hypothetical protein
Length = 639
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 256/615 (41%), Positives = 343/615 (55%), Gaps = 81/615 (13%)
Query: 43 QSIIKAASNVCFSLFXXXXXXXXXXXXXYQPPDPWLQ-SSAAITTSLSRVLPNSTFLLPD 101
++ +++ N+ F+LF + P DP L SS +T L+ NSTFL D
Sbjct: 28 RAALRSGGNLLFALFVAAVLAFTLLAAVHSPDDPLLHPSSHQLTAFLTSATSNSTFL-AD 86
Query: 102 DSLLPTGEDF------NSS------------SSTPSAPRRDDPDQXXXXXXXXXVNG--- 140
DS+L TGEDF NSS + P D + V
Sbjct: 87 DSVLRTGEDFAAAIGANSSDAAAAAEATVVAEAVPFIKLEDVATKEESSGAERAVTVDTD 146
Query: 141 ------------------TCDPDAPLNCSDPRVLXXXXXXXXXXXXXXSIVFLSYEAPVP 182
+CD +AP++C+ + L + F + PV
Sbjct: 147 ASSDAGAAAEENPIVEAVSCDTEAPVDCTGDKDLFNLLMRTAIEKFS-DLHFYRFGRPVA 205
Query: 183 GP-KPGECDVAWRFRNRREKSWRR--YRDYRRFVLVPG-DGCALDINRVGKFRSGTNAAR 238
P P ECD+AWRFR + + R Y+DYRRF L + C L + VG++ SGT A R
Sbjct: 206 VPGSPMECDLAWRFRPAEDTNGRTTYYKDYRRFTLTRDVNTCNLVVGNVGEYHSGTGAKR 265
Query: 239 PPRQKGSKNRNPRVAPPPVD------------------------------AEINDTIPIV 268
R+KG K + + P D +ND +P+V
Sbjct: 266 SGRRKGKKGKKGKREAPVTDFVPAKTQMRLDENAANADTTAASEPELVVGEAVNDNLPVV 325
Query: 269 GSEAEFRRGKYLYYMRGGDHCKSMNQFIWSFLCGLGEAKFLNRTFVMDLNMCLSGAHTNN 328
SE+EF RGKYL YM GG+ CKSMN ++W FLC LGEA++LNRT VMDLN+CL+ +T++
Sbjct: 326 ESESEFSRGKYLIYMGGGERCKSMNHYVWGFLCALGEAQYLNRTLVMDLNVCLNSRYTSS 385
Query: 329 GKDEDGKDFRYYFDFEHLKESVSVVEEGDFLKDWKRWDKKKGPGRISVRKVPSYKVTPMQ 388
GKDE+ +DFR YFDFEHLK+S SV+++ F DW +W KK R+ KVTPMQ
Sbjct: 386 GKDEE-RDFRLYFDFEHLKQSASVIDQSQFWTDWGKWHKKD---RLKNHYTEDIKVTPMQ 441
Query: 389 LKRDKSNIIWRLFDGQEPENYWYRVCEGRAAKVIQRPWYAIWKSKRLMNIVTEIAGRMDW 448
L+ K +I R F EP+N+W RVCEG VI+RPWY +WKS+RLM IV+ I+ RMDW
Sbjct: 442 LRDVKDTLIMRKFGNVEPDNFWSRVCEGETEAVIKRPWYLLWKSRRLMEIVSAISSRMDW 501
Query: 449 DYDGLHVIRGWKAQNKQMYPNLDADTSPEALVDKVPKLIKQPMRNLYIATNEPFYNYFDK 508
D+D +HV+RG KAQNKQ++PNLD DTSP++L+ + + R+LYIATNEP ++FD
Sbjct: 502 DFDSVHVVRGEKAQNKQLWPNLDRDTSPDSLLTTLNDKVGAG-RHLYIATNEPDKSFFDP 560
Query: 509 LRSYFHVHLLDDYKELWSNTSEWYNETTTLSGGRPVPFDAYMRVIVDTEVFYRAKTQVET 568
++ + H LDD+K+LW SEWY ET LS G V FD YMRV VDTEVF R K ++ET
Sbjct: 561 MKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVEFDGYMRVAVDTEVFLRGKRKLET 620
Query: 569 FNNLTRDCKDGINTC 583
F++LTRDCK+G+NTC
Sbjct: 621 FSDLTRDCKNGVNTC 635
>Os01g0805100 Conserved hypothetical protein
Length = 259
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 22/279 (7%)
Query: 292 MNQFIWSFLCGLGEAKFLNRTFVMDLNMCLSGAHTNNGKDEDGKDFRYYFDFEHLKESVS 351
M ++ S LC + EA++LNRT V+DL++CL+ A+ G E+GK +Y D EHL+ V
Sbjct: 1 MPHYLRSLLCSIAEARYLNRTLVLDLSVCLAAAYAG-GMPEEGKRLAFYIDIEHLQSVVG 59
Query: 352 VVEEGDFLKDWKRWDKKKGPGRISVRKVPSYKVTPMQLKRDKSNIIWRLFDGQEPENYWY 411
+VE F +DW +W + G++ VR + +V P + + + +I R F EP NYWY
Sbjct: 60 IVEHKRFWEDWDKWGAQ---GQLGVRIIEDSRVAPTKFSKSRDPLIVRKFGDVEPGNYWY 116
Query: 412 RVCEGRAAKVIQRPWYAIWKSKRLMNIVTEIAGRMDWDYDGLHVIRGWKAQNKQMYPNLD 471
VCEG A V++ P AI + LM+IV I RM D+D +HV G N
Sbjct: 117 NVCEGEAEHVLRPPQGAIRTAPSLMDIVDGIISRMQVDFDSVHV--GGNDGN-------- 166
Query: 472 ADTSPEALVDKVPKLIKQPMRNLYIATNEPFYNYFDKLRS-YFHVHLLDDYKELWSNTSE 530
L ++ + + R +Y+A D L++ Y VH LD ++ELW+ S+
Sbjct: 167 -------LRRRIEERLNGGGRQVYVAGEGINVVLLDALKAKYSSVHYLDAFEELWARDSK 219
Query: 531 WYNETTTLSGGRPVPFDAYMRVIVDTEVFYRAKTQVETF 569
W+ E L+GG PV FD YMR +VD EVF + K +VE
Sbjct: 220 WFLEMKRLNGGVPVEFDGYMRELVDREVFLKGKKKVEVL 258
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,653,219
Number of extensions: 978817
Number of successful extensions: 2198
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2185
Number of HSP's successfully gapped: 4
Length of query: 585
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 479
Effective length of database: 11,501,117
Effective search space: 5509035043
Effective search space used: 5509035043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)