BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0616900 Os07g0616900|AK071047
(462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0616900 Protein of unknown function DUF500 family protein 933 0.0
Os07g0272400 Protein of unknown function DUF500 family protein 548 e-156
Os02g0233100 Protein of unknown function DUF500 family protein 369 e-102
Os06g0552400 Protein of unknown function DUF500 family protein 348 7e-96
>Os07g0616900 Protein of unknown function DUF500 family protein
Length = 462
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/462 (97%), Positives = 450/462 (97%)
Query: 1 MGAPNEVTSYSSLSKIDSNNQGGHLSSLVPANIYPAQDYLYEPSLEPDFPSEYDSREDPF 60
MGAPNEVTSYSSLSKIDSNNQGGHLSSLVPANIYPAQDYLYEPSLEPDFPSEYDSREDPF
Sbjct: 1 MGAPNEVTSYSSLSKIDSNNQGGHLSSLVPANIYPAQDYLYEPSLEPDFPSEYDSREDPF 60
Query: 61 VPTRASSNINLKTVLTGLAAIVSGTNKNQDNTLQQQSFSTDVSFLGFDKDGDVNVHPSVC 120
VPTRASSNINLKTVLTGLAAIVSGTNKNQDNTLQQQSFSTDVSFLGFDKDGDVNVHPSVC
Sbjct: 61 VPTRASSNINLKTVLTGLAAIVSGTNKNQDNTLQQQSFSTDVSFLGFDKDGDVNVHPSVC 120
Query: 121 VPSAPPLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGG 180
VPSAPPLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGG
Sbjct: 121 VPSAPPLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGG 180
Query: 181 IFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTS 240
IFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTS
Sbjct: 181 IFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTS 240
Query: 241 TRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGA 300
TRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGA
Sbjct: 241 TRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGA 300
Query: 301 VLTYKVGTGLVVARRSDGSWSAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSR 360
VLTYKVGTGLVVARRSDGSWSAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSR
Sbjct: 301 VLTYKVGTGLVVARRSDGSWSAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSR 360
Query: 361 MHXXXXXXXXXXXXPIGRAFEADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSET 420
MH PIGRAFEADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSET
Sbjct: 361 MHLSLGAGLSAAAGPIGRAFEADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSET 420
Query: 421 NLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKMVY 462
NLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKMVY
Sbjct: 421 NLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKMVY 462
>Os07g0272400 Protein of unknown function DUF500 family protein
Length = 497
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 257/410 (62%), Positives = 315/410 (76%), Gaps = 3/410 (0%)
Query: 53 YDSREDPF--VPTRASSNINLKTVLTGLAAIVSGTNKNQDNTLQQQSFSTDVSFLGFDKD 110
YD +D + P +A +NL+ +L GL AI+S KN + + + S+ V+FLG D
Sbjct: 87 YDCADDGWGSAPLKADKPVNLRNLLGGLIAIISRGGKNSEIQPPKDTKSS-VAFLGSGSD 145
Query: 111 GDVNVHPSVCVPSAPPLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQCSLPFTALTR 170
G+ +H SV VPSAPPLL+ AL Y+ YR V++A+PPEWLPDS + C+QC+ FT +TR
Sbjct: 146 GETFLHASVYVPSAPPLLDEEALNYNVYRVVIEAEPPEWLPDSYANSCMQCAASFTVVTR 205
Query: 171 GRHHCRFCGGIFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSNAMQP 230
GRHHCRFCGGIFC+ CSKGRCL+P KFR+R+PQRVCDACYDRLDPLQ + IN SNA Q
Sbjct: 206 GRHHCRFCGGIFCRTCSKGRCLLPAKFRERNPQRVCDACYDRLDPLQNLFINSISNATQT 265
Query: 231 AKHDVMDWTSTRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPSSILKGAKGL 290
AKHDVMDWTSTR WLNLP+GL+ME+EIYKA N++ Y Q+ARLNPE+SIP ++L GA GL
Sbjct: 266 AKHDVMDWTSTRGWLNLPIGLTMEHEIYKAANSVRSYSQIARLNPERSIPHAVLSGASGL 325
Query: 291 AVITVAKAGAVLTYKVGTGLVVARRSDGSWSAPSAIASVGLGWGVQFGGELTDFIIVLHD 350
A++TV KAGA+LTYK+GTGLVVARRSDGSWS PSAI SVGLGWG Q G EL DFIIVL
Sbjct: 326 AILTVVKAGALLTYKLGTGLVVARRSDGSWSPPSAIVSVGLGWGAQVGAELMDFIIVLRG 385
Query: 351 RKAVKAFSSRMHXXXXXXXXXXXXPIGRAFEADVRASEKGSGLCYTYSCSKGAFVGVSLE 410
+AV+ FSS+MH P+GR EAD+RA +KGSG+CYTYSCSKGAF+GVSLE
Sbjct: 386 LEAVRTFSSQMHFSVGAGLSAAAGPVGRVLEADLRAGDKGSGVCYTYSCSKGAFIGVSLE 445
Query: 411 GNVVTTRSETNLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKM 460
GN V TR + NLRFYGD YLTT+DIL G +++P AA+ LY+ALD L+S +
Sbjct: 446 GNFVATRRDANLRFYGDPYLTTSDILMGDMQRPNAAKFLYTALDGLYSGL 495
>Os02g0233100 Protein of unknown function DUF500 family protein
Length = 535
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/318 (55%), Positives = 218/318 (68%), Gaps = 1/318 (0%)
Query: 140 EVLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGGIFCKDCSKGRCLMPMKFRQ 199
E+L+ + WLPDS+ S C+ C++ F + RHHCRFCGG+FC CSKGR LMP KF
Sbjct: 211 ELLETERTIWLPDSAASACMLCNVRFHPIMCSRHHCRFCGGVFCGGCSKGRSLMPPKFNT 270
Query: 200 RDPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTSTRSWLNLPVGLSMEYEIYK 259
+PQRVCD C RL+ +Q LIN S A QP HDV D ++ RSWLN P +MEYEIYK
Sbjct: 271 SEPQRVCDVCGVRLESIQPYLINRISRASQPPTHDVTDLSTLRSWLNFPYAHTMEYEIYK 330
Query: 260 ATNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGAVLTYKVGTGLVVARRSDGS 319
A N+LN YC+V RL PEK+IP +ILK AKGLA+ITVAK G ++ YKVGTGLV+ARR+DGS
Sbjct: 331 AANSLNSYCKVGRLKPEKAIPYTILKQAKGLAIITVAKVGMMVAYKVGTGLVIARRADGS 390
Query: 320 WSAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSRMHXXXXXXXXXXXXPIGRA 379
WS PSAIA+ G+G+G Q GGEL DFIIVL + +AVK FS + H +GR
Sbjct: 391 WSPPSAIATCGIGYGAQAGGELADFIIVLRNTEAVKTFSGKAHLSVGAGVSASVGHVGRV 450
Query: 380 FEADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSETNLRFYGDAYLTTTDILFGK 439
EAD RA + G CYTYSCSKGAFVG +L G++V+TR N RFYG + DIL G
Sbjct: 451 AEADFRAGDGGYAACYTYSCSKGAFVGCALNGSLVSTRDTENARFYGGP-IKAPDILMGS 509
Query: 440 VEKPRAAQPLYSALDDLF 457
+ +P AA LY L +LF
Sbjct: 510 MARPPAAAALYKVLSELF 527
>Os06g0552400 Protein of unknown function DUF500 family protein
Length = 549
Score = 348 bits (892), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 214/320 (66%), Gaps = 1/320 (0%)
Query: 141 VLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGGIFCKDCSKGRCLMPMKFRQR 200
+L+A+P WLPDS+ C+ C F + RHHCRFCGG+FC CSKGR LMP KF
Sbjct: 222 LLEAEPTVWLPDSAAPSCMLCGARFHPIICSRHHCRFCGGLFCGGCSKGRSLMPPKFSTS 281
Query: 201 DPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTSTRSWLNLPVGLSMEYEIYKA 260
+PQRVCD C RL+ +Q L+N S A Q +D+ D ++ RSWLNLP +MEYEIYKA
Sbjct: 282 EPQRVCDVCGVRLECIQPYLMNKISRACQIPTNDLTDLSTLRSWLNLPWARTMEYEIYKA 341
Query: 261 TNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGAVLTYKVGTGLVVARRSDGSW 320
N++ Y +V L PEKSIP SIL+ AKGLA+ITV G ++TYK+GTGLVVARR+DGSW
Sbjct: 342 VNSIYGYFKVGSLKPEKSIPDSILRQAKGLAIITVVNVGMMVTYKIGTGLVVARRADGSW 401
Query: 321 SAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSRMHXXXXXXXXXXXXPIGRAF 380
S PSAI++ G+G+GVQ GGEL D+IIVL + A++ FS H +GR
Sbjct: 402 SPPSAISTYGVGYGVQAGGELADYIIVLRNTDAIRTFSGNAHLSVGAGISASAGHLGRVA 461
Query: 381 EADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSETNLRFYGDAYLTTTDILFGKV 440
EAD RA + G CYTYSCSKGAFVG +L G+VV+TR N +FYG + ++IL G V
Sbjct: 462 EADFRAGDGGYAACYTYSCSKGAFVGCALNGSVVSTRHSANAQFYGGP-IKASEILLGSV 520
Query: 441 EKPRAAQPLYSALDDLFSKM 460
+P AA LY AL LF K+
Sbjct: 521 SRPAAAATLYRALSKLFEKV 540
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,197,660
Number of extensions: 693118
Number of successful extensions: 1495
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 4
Length of query: 462
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 358
Effective length of database: 11,605,545
Effective search space: 4154785110
Effective search space used: 4154785110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)