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Os02g0233100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF500 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.51 (0.0151) R2 : 0.000258
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0109 (0.0317) R2dN8 : 0.000333 R2N8 : 0.000258
σ : 0.284
deviance : 37.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.77 0.243 9.49 0.411 0.073 -0.43 -0.608 -0.706 0.0554 20.3 20.86 114 -- --
27.19 0.243 9.49 0.42 0.0851 -0.392 -0.495 -- 0.0548 19.2 15.75 122 -- --
27.34 0.244 9.49 0.441 0.163 -0.483 -- -0.183 0.0628 15.6 7.365 123 -- --
27.38 0.244 9.49 0.433 0.176 -0.497 -- -- 0.0617 15.3 5.387 122 -- --
28.1 0.247 9.49 0.425 -- -0.432 -- -0.391 0.0544 -- 19.07 114 -- --
30.26 0.258 9.5 0.415 0.144 -- -0.399 -- 0.0366 21.6 -- -- -- --
30.81 0.26 9.5 0.428 0.147 -- -- -- 0.0364 22.4 -- -- -- --
28.25 0.248 9.49 0.426 -- -0.381 -- -- 0.0524 -- 12.39 94 -- --
32.3 0.265 9.5 -- 0.164 -0.49 -- -- 0.0139 15.2 5.099 115 -- --
32.12 0.265 9.5 0.431 -- -- -- -- 0.0369 -- -- -- -- --
35.65 0.279 9.51 -- 0.149 -- -- -- -0.0113 22.6 -- -- -- --
32.96 0.267 9.5 -- -- -0.408 -- -- 0.00206 -- 16.07 81 -- --
37.02 0.284 9.51 -- -- -- -- -- -0.0109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.31 wind 1.0 14400 < th dose independent rect. 10 3
2 25.35 wind 1.0 14400 > th dose independent rect. 10 3
3 25.53 wind 1.0 14400 < th dose dependent rect. 10 3
7 25.95 precipitation 0.1 43200 > th dose dependent rect. 2 1
8 25.96 precipitation 0.1 43200 < th dose independent rect. 2 1
9 25.96 precipitation 0.1 43200 < th dose dependent rect. 2 1
10 25.96 temperature 20.0 90 > th dose dependent rect. 19 20
11 25.97 radiation 30.0 14400 > th dose independent rect. 12 1
12 25.97 radiation 30.0 14400 < th dose independent rect. 12 1
15 26.01 precipitation 0.1 43200 > th dose independent rect. 2 1
18 26.04 radiation 20.0 14400 > th dose dependent rect. 12 1
25 26.12 precipitation 0.1 43200 > th dose dependent rect. 20 8
31 26.17 precipitation 0.1 43200 > th dose independent rect. 17 11
35 26.18 precipitation 0.1 43200 < th dose independent rect. 17 10
37 26.18 precipitation 0.1 43200 < th dose dependent rect. 17 10
47 26.20 precipitation 0.1 43200 < th dose independent rect. 20 8
48 26.20 precipitation 0.1 43200 < th dose dependent rect. 20 8
51 26.21 precipitation 0.1 43200 > th dose independent rect. 20 8
54 26.23 precipitation 0.1 43200 > th dose dependent rect. 23 4
57 26.24 radiation 40.0 14400 < th dose dependent rect. 12 1
59 26.25 wind 1.0 14400 < th dose independent rect. 8 6
63 26.25 precipitation 0.1 43200 > th dose dependent rect. 22 6
73 26.27 radiation 10.0 14400 > th dose independent rect. 17 14
78 26.28 precipitation 0.1 43200 < th dose independent rect. 23 4
79 26.28 precipitation 0.1 43200 < th dose independent rect. 22 6
83 26.28 precipitation 0.1 43200 < th dose dependent rect. 23 4
84 26.28 precipitation 0.1 43200 < th dose dependent rect. 22 6
88 26.30 precipitation 0.1 43200 > th dose independent rect. 22 6
93 26.30 wind 1.0 43200 < th dose dependent rect. 3 2
106 26.32 radiation 10.0 14400 > th dose independent rect. 6 1
107 26.32 precipitation 0.1 43200 > th dose independent rect. 23 4
123 26.32 precipitation 0.1 43200 > th dose dependent rect. 21 21
161 26.34 precipitation 0.1 43200 > th dose dependent rect. 17 11
193 26.36 precipitation 0.1 43200 > th dose dependent rect. 14 14
197 26.36 precipitation 0.1 43200 > th dose dependent rect. 12 16
210 26.37 humidity 90.0 43200 > th dose dependent rect. 21 1
218 26.38 precipitation 0.1 43200 > th dose independent sin 14 NA
219 26.38 precipitation 0.1 43200 < th dose independent sin 14 NA
226 26.38 precipitation 0.1 43200 < th dose dependent sin 14 NA
235 26.39 humidity 90.0 43200 > th dose independent rect. 21 1
269 26.40 precipitation 0.1 43200 > th dose dependent rect. 21 3
292 26.42 precipitation 0.1 43200 < th dose independent rect. 23 2
303 26.42 radiation 10.0 14400 > th dose dependent rect. 6 1
305 26.42 precipitation 0.1 43200 < th dose dependent rect. 23 2
310 26.42 radiation 10.0 14400 > th dose dependent rect. 17 14
341 26.43 precipitation 0.1 43200 > th dose dependent rect. 20 17
356 26.44 precipitation 0.1 43200 < th dose independent rect. 20 22
367 26.44 precipitation 0.1 43200 < th dose dependent rect. 20 22
380 26.45 precipitation 0.1 43200 > th dose independent rect. 20 22
382 26.45 precipitation 0.1 43200 > th dose dependent sin 13 NA
426 26.46 precipitation 0.1 43200 > th dose dependent rect. 24 18
430 26.47 wind 1.0 43200 < th dose independent rect. 3 2
482 26.48 precipitation 0.1 43200 > th dose dependent rect. 20 19
493 26.49 temperature 30.0 14400 < th dose independent rect. 1 8
495 26.49 temperature 30.0 43200 < th dose independent rect. 18 15
509 26.49 precipitation 0.1 43200 > th dose dependent rect. 20 13
519 26.49 precipitation 0.1 43200 > th dose dependent rect. 17 23
522 26.50 temperature 30.0 14400 < th dose independent rect. 5 4
524 26.50 temperature 30.0 14400 < th dose independent rect. 3 6
533 26.50 precipitation 0.1 43200 > th dose independent rect. 17 20
534 26.50 precipitation 0.1 43200 < th dose independent rect. 17 20
539 26.50 precipitation 0.1 43200 > th dose independent rect. 17 22
541 26.50 precipitation 0.1 43200 < th dose independent rect. 17 22
544 26.50 temperature 25.0 270 > th dose dependent sin 8 NA
554 26.50 precipitation 0.1 43200 > th dose dependent rect. 17 20
555 26.50 precipitation 0.1 43200 < th dose dependent rect. 17 20
559 26.50 precipitation 0.1 43200 < th dose dependent rect. 17 22
567 26.51 precipitation 0.1 43200 > th dose independent rect. 23 2
606 26.51 radiation 40.0 270 < th dose dependent sin 4 NA
677 26.52 wind 1.0 43200 > th dose independent rect. 3 2
691 26.52 radiation 40.0 90 < th dose dependent sin 2 NA
695 26.52 temperature 30.0 14400 > th dose dependent rect. 8 1
744 26.53 radiation 40.0 14400 < th dose independent rect. 12 14
810 26.53 precipitation 0.1 43200 > th dose dependent rect. 14 23
815 26.54 temperature 30.0 14400 > th dose independent rect. 8 1
817 26.54 wind 1.0 43200 > th dose independent rect. 21 2
854 26.54 precipitation 0.1 43200 > th dose independent rect. 14 23
883 26.55 precipitation 0.1 43200 < th dose independent rect. 20 17
893 26.55 precipitation 0.1 43200 < th dose independent rect. 14 23
921 26.55 precipitation 0.1 43200 < th dose dependent rect. 20 17
932 26.55 precipitation 0.1 43200 < th dose dependent rect. 14 23
933 26.56 precipitation 0.1 43200 > th dose independent no NA NA
934 26.56 precipitation 0.1 43200 < th dose independent no NA NA
961 26.56 precipitation 0.1 43200 > th dose independent rect. 20 17
982 26.56 precipitation 0.1 43200 > th dose independent rect. 24 23
986 26.56 precipitation 0.1 43200 < th dose independent rect. 24 23
988 26.56 precipitation 0.1 43200 > th dose dependent no NA NA
989 26.56 precipitation 0.1 43200 < th dose dependent no NA NA