BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0233100 Os02g0233100|AK121278
         (535 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29800.1  | chr1:10432736-10435177 FORWARD LENGTH=511          549   e-156
AT3G43230.1  | chr3:15207776-15209599 FORWARD LENGTH=486          334   7e-92

>AT1G29800.1 | chr1:10432736-10435177 FORWARD LENGTH=511
          Length = 510

 Score =  549 bits (1414), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 262/444 (59%), Positives = 330/444 (74%), Gaps = 3/444 (0%)

Query: 89  KREEGMNFHCDPPLHEHTGIWVPVSVPPMTKRDHEEWHKGFGHNGDYFPEDEFNW-EIDE 147
           +++ G  F  D PL E TG+W+PVSVPPM + DHEEW +G   NG YFPE +  W +I +
Sbjct: 50  QQKHGKYFFYDTPLSEETGVWIPVSVPPMLEPDHEEWSRGLSFNGGYFPEGDMGWDQIFD 109

Query: 148 ENKEMTMWDVFSEMVVAAKDKVISVASYDLGRRGMSMLSKFFFQEAWKDMAQTLADANAG 207
           E+KE+TMWDV  +M++AA+ K  +++S +L R G++ LS    ++AW+DMA TL +AN G
Sbjct: 110 EDKELTMWDVIVDMLLAARGKASALSSGNLERCGINFLSGHLLEQAWQDMAHTLTEANFG 169

Query: 208 IANELLETERTIWLPDSAASACMLCNVRFHPIMCSRHHXXXXXXXXXXXXSKGRSLMPPK 267
            A E+LETE   WLPDSAASACMLC+VRFHPIMCSRHH            SKG+SL+P K
Sbjct: 170 NAREILETEPPKWLPDSAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSLVPVK 229

Query: 268 FNTSEPQRVCDVCGVRLESIQPYLINRISRASQPPTHDVTDLSTLRSWLNFPYAHTMEYE 327
           F  S+PQRVCDVC VRLES+QPYL++++S A+Q PTHD+TDLSTLRSW+NFP+  +MEYE
Sbjct: 230 FRVSDPQRVCDVCFVRLESVQPYLMDQVSPAAQLPTHDLTDLSTLRSWVNFPWGQSMEYE 289

Query: 328 IYKAANSLNSY-CKVGRLKPEKAIPYTILKQAKGLAIITVAKVGMMVAYKVGTGLVIARR 386
           IYKA N+L  Y  KVG  + E++IP  IL+QAKGLA+ITVA+VG+MV YK+GTGLV+ARR
Sbjct: 290 IYKATNTLRGYITKVGSSRTERSIPDAILRQAKGLAVITVARVGVMVTYKIGTGLVVARR 349

Query: 387 ADGSWSPPSAIATCGIGYGAQAGGELADFIIVLRNTEAVKTFSGKAHLXXXXXXXXXXXX 446
            DGSWSPPSAI++ G+G+GAQAGGE  DFIIVLR  EA++TF    HL            
Sbjct: 350 DDGSWSPPSAISSFGLGWGAQAGGEFIDFIIVLRTREAIQTFGSNTHLVVGAGLSAAVGV 409

Query: 447 XXXXXEADFRAGDGGYAACYTYSCSKGAFVGCALNGSLVSTRDTENARFYGG-PIKAPDI 505
                EAD RAG GGYAACYTYSCSKGAFVGC+L GS+ +TR +EN+RFYG   + A DI
Sbjct: 410 TGRAVEADIRAGSGGYAACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQSLAASDI 469

Query: 506 LMGSMARPPAAAALYKVLSELFDN 529
           L+GS+ RPPAAAALY+ L +L+  
Sbjct: 470 LLGSLPRPPAAAALYRALGDLYQK 493



>AT3G43230.1 | chr3:15207776-15209599 FORWARD LENGTH=486
          Length = 485

 Score =  334 bits (857), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 172/324 (53%), Positives = 205/324 (63%), Gaps = 1/324 (0%)

Query: 205 NAGIANELLETERTIWLPDSAASACMLCNVRFHPIMCSRHHXXXXXXXXXXXXSKGRSLM 264
           N  +  ELLE E   WLPDS AS CM C+  F  I C RHH            SKGR LM
Sbjct: 157 NYSVYKELLEAEPPEWLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGRCLM 216

Query: 265 PPKFNTSEPQRVCDVCGVRLESIQPYLINRISRASQPPTHDVTDLSTLRSWLNFPYAHTM 324
           P +F    PQRVCD C  RL+ +Q  LIN IS A Q   HDV D +  R WLN P   +M
Sbjct: 217 PSRFRERNPQRVCDSCYERLDPLQCVLINSISNAVQVAKHDVVDWTCSRGWLNLPVGLSM 276

Query: 325 EYEIYKAANSLNSYCKVGRLKPEKAIPYTILKQAKGLAIITVAKVGMMVAYKVGTGLVIA 384
           E EIYKAAN+L  YC+V RL PEK+IP+ +L +AKGLAIITVAK G +++YK+GTGLVI+
Sbjct: 277 EDEIYKAANTLRGYCQVARLDPEKSIPHAVLSRAKGLAIITVAKAGALLSYKLGTGLVIS 336

Query: 385 RRADGSWSPPSAIATCGIGYGAQAGGELADFIIVLRNTEAVKTFSGKAHLXXXXXXXXXX 444
           RR DGSWS PSAI + G+G+GAQ GGEL DFIIVL + +AVKTF  + H           
Sbjct: 337 RRPDGSWSAPSAILSVGLGWGAQIGGELMDFIIVLHDVKAVKTFCSRMHFSLGAGCSAAA 396

Query: 445 XXXXXXXEADFRAGDGGYAACYTYSCSKGAFVGCALNGSLVSTRDTENARFYGGP-IKAP 503
                  EAD RAGD G   CYTYS SKGAFVG +L G+LV+TR   N +FYG P +   
Sbjct: 397 GPIGRVLEADLRAGDKGSGVCYTYSRSKGAFVGVSLEGNLVATRRDMNVKFYGDPYLSTS 456

Query: 504 DILMGSMARPPAAAALYKVLSELF 527
           DIL+G + +P AA  LY  L EL+
Sbjct: 457 DILLGMVDQPKAAEPLYTALRELY 480



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,557,261
Number of extensions: 456714
Number of successful extensions: 935
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 432
Effective length of database: 8,282,721
Effective search space: 3578135472
Effective search space used: 3578135472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)