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Os07g0616900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF500 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0184) R2 : 0.0894
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.259 (0.0386) R2dN8 : 0.115 R2N8 : 0.0894
σ : 0.346
deviance : 54.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.77 0.277 10.7 0.713 0.737 -0.574 0.563 -0.69 -0.216 1.53 0.1157 114 -- --
35.73 0.278 10.7 0.654 0.77 -0.589 0.0771 -- -0.193 1.54 0.2103 122 -- --
34.97 0.275 10.7 0.711 0.715 -0.555 -- -0.308 -0.215 1.63 0.1701 113 -- --
35.32 0.277 10.7 0.694 0.74 -0.576 -- -- -0.231 1.55 0.17 118 -- --
38.99 0.291 10.7 0.682 -- 0.104 -- -0.669 -0.195 -- 0.0008165 453 -- --
38.94 0.293 10.7 0.727 0.152 -- -0.481 -- -0.183 5.05 -- -- -- --
39.51 0.294 10.7 0.728 0.151 -- -- -- -0.181 5.51 -- -- -- --
39.32 0.292 10.7 0.742 -- 0.202 -- -- -0.171 -- 0.36 753 -- --
47.34 0.32 10.7 -- 0.798 -0.64 -- -- -0.296 1.52 0.01725 122 -- --
40.7 0.298 10.7 0.733 -- -- -- -- -0.177 -- -- -- -- --
53.47 0.342 10.7 -- 0.163 -- -- -- -0.262 5.32 -- -- -- --
53.72 0.341 10.7 -- -- 0.188 -- -- -0.241 -- 10 794 -- --
54.86 0.346 10.7 -- -- -- -- -- -0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.90 temperature 10.0 270 > th dose dependent rect. 18 9
5 30.03 temperature 20.0 90 > th dose dependent rect. 20 8
44 31.32 temperature 20.0 10 > th dose independent rect. 9 21
45 31.33 humidity 90.0 10 < th dose independent rect. 2 7
53 31.44 temperature 20.0 270 > th dose independent rect. 18 9
59 31.48 wind 1.0 30 > th dose independent rect. 12 21
61 31.53 wind 1.0 270 > th dose independent rect. 3 14
63 31.54 wind 1.0 30 > th dose independent rect. 14 19
74 31.67 temperature 20.0 10 > th dose independent rect. 20 9
108 31.91 humidity 60.0 270 > th dose independent rect. 17 10
109 31.91 radiation 10.0 270 < th dose independent rect. 17 10
112 31.94 temperature 30.0 270 < th dose independent rect. 17 10
127 32.07 temperature 25.0 30 > th dose independent rect. 1 8
140 32.17 wind 1.0 30 > th dose independent rect. 23 10
146 32.20 temperature 25.0 270 < th dose independent rect. 16 14
147 32.20 temperature 20.0 10 > th dose independent rect. 20 19
153 32.26 temperature 20.0 10 > th dose independent rect. 20 16
168 32.32 radiation 20.0 270 < th dose dependent rect. 17 10
184 32.44 atmosphere 1005.0 30 > th dose dependent rect. 3 6
194 32.47 atmosphere 995.0 270 > th dose independent rect. 17 10
198 32.47 temperature 10.0 270 > th dose independent rect. 3 14
199 32.47 atmosphere 1015.0 270 < th dose independent rect. 3 14
200 32.47 precipitation 0.1 270 < th dose independent rect. 3 14
202 32.47 precipitation 0.1 270 < th dose dependent rect. 3 14
214 32.55 wind 9.0 270 < th dose independent rect. 17 10
224 32.59 radiation 1.0 90 > th dose independent sin 12 NA
227 32.60 precipitation 0.1 270 < th dose independent rect. 17 10
229 32.60 wind 9.0 270 < th dose independent rect. 3 14
232 32.60 precipitation 0.1 270 < th dose dependent rect. 17 10
234 32.61 radiation 1.0 30 > th dose independent rect. 16 17
241 32.65 wind 1.0 270 > th dose independent rect. 12 19
242 32.66 radiation 1.0 90 < th dose independent sin 12 NA
244 32.66 atmosphere 1005.0 270 > th dose dependent rect. 3 3
255 32.73 wind 1.0 30 > th dose independent rect. 4 5
272 32.78 temperature 30.0 270 < th dose independent rect. 7 20
277 32.82 temperature 15.0 90 > th dose independent rect. 9 14
281 32.82 temperature 10.0 30 > th dose dependent rect. 9 19
284 32.83 temperature 20.0 720 > th dose dependent rect. 18 1
285 32.84 radiation 1.0 90 > th dose independent rect. 12 21
318 32.94 temperature 10.0 1440 > th dose independent rect. 6 4
321 32.94 atmosphere 995.0 1440 > th dose independent rect. 6 4
322 32.94 atmosphere 1015.0 1440 < th dose independent rect. 6 4
324 32.94 temperature 10.0 1440 > th dose independent rect. 10 20
343 32.99 radiation 1.0 90 < th dose dependent sin 12 NA
344 33.00 wind 5.0 30 < th dose independent rect. 23 10
345 33.00 radiation 20.0 4320 < th dose independent rect. 19 11
358 33.03 humidity 50.0 270 > th dose independent rect. 7 20
375 33.07 radiation 1.0 10 > th dose dependent rect. 9 3
392 33.13 wind 1.0 270 > th dose independent rect. 3 4
417 33.19 atmosphere 1005.0 10 > th dose dependent rect. 6 3
419 33.19 temperature 30.0 270 < th dose dependent rect. 15 15
426 33.22 radiation 30.0 90 < th dose independent rect. 23 10
431 33.24 temperature 25.0 270 > th dose independent sin 13 NA
443 33.26 humidity 90.0 10 < th dose independent rect. 9 6
454 33.28 radiation 20.0 4320 < th dose independent rect. 21 9
455 33.28 atmosphere 995.0 270 > th dose independent rect. 3 14
459 33.29 temperature 30.0 90 < th dose independent rect. 23 10
462 33.30 temperature 25.0 720 > th dose independent rect. 17 2
483 33.34 temperature 10.0 1440 > th dose independent rect. 24 10
486 33.34 atmosphere 995.0 1440 > th dose independent rect. 24 10
487 33.34 temperature 10.0 1440 > th dose independent rect. 10 14
500 33.36 humidity 50.0 14400 > th dose independent rect. 19 11
515 33.38 wind 1.0 270 > th dose independent rect. 4 1
535 33.40 atmosphere 1015.0 90 < th dose independent rect. 9 14
536 33.40 atmosphere 1010.0 10 < th dose independent rect. 20 16
549 33.41 temperature 15.0 270 > th dose independent rect. 7 14
557 33.42 temperature 10.0 30 > th dose independent rect. 23 10
559 33.42 humidity 50.0 30 > th dose independent rect. 23 10
561 33.42 atmosphere 995.0 30 > th dose independent rect. 23 10
563 33.42 wind 9.0 30 < th dose independent rect. 9 14
567 33.42 precipitation 0.1 30 < th dose independent rect. 9 14
569 33.42 temperature 15.0 10 > th dose dependent rect. 6 3
570 33.42 precipitation 0.1 30 < th dose dependent rect. 9 14
589 33.46 precipitation 0.1 1440 < th dose independent rect. 10 3
596 33.46 precipitation 0.1 1440 < th dose dependent rect. 10 3
602 33.47 wind 7.0 10 < th dose dependent rect. 6 3
620 33.50 precipitation 0.1 30 < th dose independent rect. 23 10
622 33.50 radiation 40.0 30 < th dose independent rect. 15 18
624 33.50 precipitation 0.1 30 < th dose dependent rect. 23 10
641 33.52 wind 9.0 30 < th dose independent rect. 15 18
644 33.53 wind 9.0 10 < th dose independent rect. 9 6
678 33.58 temperature 15.0 270 > th dose independent rect. 9 1
679 33.58 radiation 30.0 90 < th dose independent rect. 5 4
682 33.58 radiation 1.0 10 > th dose independent rect. 9 7
683 33.58 atmosphere 1010.0 270 < th dose independent rect. 18 9
693 33.59 radiation 1.0 270 > th dose independent rect. 9 1
709 33.61 temperature 10.0 30 > th dose independent rect. 9 6
711 33.61 temperature 10.0 1440 > th dose independent rect. 10 6
714 33.61 atmosphere 995.0 30 > th dose independent rect. 9 6
715 33.61 atmosphere 1015.0 30 < th dose independent rect. 9 6
716 33.61 precipitation 0.1 30 < th dose independent rect. 9 6
728 33.61 atmosphere 995.0 30 > th dose independent rect. 9 14
730 33.61 temperature 10.0 30 > th dose independent rect. 15 18
731 33.61 temperature 10.0 1440 > th dose independent rect. 16 18
740 33.61 precipitation 0.1 30 < th dose dependent rect. 9 6
754 33.62 temperature 20.0 10 > th dose independent rect. 18 21
778 33.65 temperature 25.0 270 < th dose independent sin 13 NA
797 33.67 wind 5.0 10 < th dose independent rect. 6 3
798 33.67 wind 5.0 270 < th dose independent rect. 3 4
804 33.67 humidity 50.0 270 > th dose dependent rect. 17 10
815 33.68 radiation 1.0 90 > th dose dependent rect. 17 14
817 33.69 temperature 10.0 1440 > th dose independent rect. 19 11
820 33.69 temperature 30.0 1440 < th dose independent rect. 19 11
824 33.69 humidity 50.0 1440 > th dose independent rect. 19 11
826 33.69 atmosphere 995.0 1440 > th dose independent rect. 19 11
836 33.69 temperature 10.0 1440 > th dose independent rect. 6 13
846 33.70 radiation 30.0 90 < th dose independent rect. 5 14
851 33.70 precipitation 0.1 30 < th dose independent rect. 15 18
852 33.70 humidity 50.0 90 > th dose independent rect. 9 20
858 33.70 precipitation 0.1 30 < th dose dependent rect. 15 18
867 33.72 temperature 15.0 270 > th dose independent rect. 7 5
869 33.72 humidity 50.0 30 > th dose independent rect. 9 6
890 33.73 temperature 20.0 10 > th dose independent rect. 11 17
903 33.75 radiation 40.0 10 < th dose independent rect. 6 3
904 33.75 radiation 1.0 30 > th dose independent rect. 5 4
943 33.77 temperature 20.0 30 > th dose independent rect. 22 14
950 33.77 wind 9.0 10 < th dose independent rect. 9 21
970 33.79 humidity 90.0 30 < th dose independent rect. 9 3
997 33.80 temperature 10.0 90 > th dose independent rect. 5 14
999 33.80 atmosphere 1015.0 90 < th dose independent rect. 5 14