Os06g0552400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF500 family protein.
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Os06g0552400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF500 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.24 | 0.254 | 10.2 | 1.15 | 0.427 | -1.14 | 0.167 | 1.4 | 0.0982 | 5.53 | 9.163 | 4570 | -- | -- |
| 31.14 | 0.26 | 10.3 | 0.907 | 0.433 | -1.24 | 0.235 | -- | 0.109 | 5.55 | 9.736 | 7372 | -- | -- |
| 29.3 | 0.252 | 10.2 | 1.16 | 0.429 | -1.14 | -- | 1.41 | 0.0978 | 5.4 | 8.489 | 4560 | -- | -- |
| 31.26 | 0.26 | 10.3 | 0.907 | 0.436 | -1.23 | -- | -- | 0.106 | 5.38 | 9.662 | 7363 | -- | -- |
| 38.21 | 0.288 | 10.2 | 1.17 | -- | -1.14 | -- | 1.38 | 0.109 | -- | 8.026 | 4823 | -- | -- |
| 56.61 | 0.353 | 10.3 | 0.278 | 0.412 | -- | 0.305 | -- | -0.222 | 5.86 | -- | -- | -- | -- |
| 56.79 | 0.353 | 10.3 | 0.279 | 0.414 | -- | -- | -- | -0.223 | 5.6 | -- | -- | -- | -- |
| 40.39 | 0.296 | 10.3 | 0.927 | -- | -1.25 | -- | -- | 0.129 | -- | 8.711 | 7697 | -- | -- |
| 43.9 | 0.31 | 10.3 | -- | 0.323 | -1.19 | -- | -- | -0.114 | 9.01 | 9.662 | 7363 | -- | -- |
| 65.71 | 0.379 | 10.3 | 0.293 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 58.84 | 0.359 | 10.3 | -- | 0.419 | -- | -- | -- | -0.254 | 5.57 | -- | -- | -- | -- |
| 49.74 | 0.33 | 10.3 | -- | -- | -1.09 | -- | -- | -0.123 | -- | 9.662 | 7363 | -- | -- |
| 67.96 | 0.385 | 10.3 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 2 | 28.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 5 | 28.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 29 | 28.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 30 | 28.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 32 | 28.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 33 | 28.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 47 | 28.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 84 | 28.90 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 108 | 29.01 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 119 | 29.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 123 | 29.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 132 | 29.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 5 |
| 147 | 29.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 228 | 29.32 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 234 | 29.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 19 |
| 242 | 29.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 244 | 29.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 269 | 29.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 19 |
| 306 | 29.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 319 | 29.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 350 | 29.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 408 | 29.44 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 444 | 29.45 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 446 | 29.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 472 | 29.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 473 | 29.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 478 | 29.46 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 540 | 29.47 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 604 | 29.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 616 | 29.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 713 | 29.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 19 |
| 763 | 29.54 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 970 | 29.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |