BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0608800 Os07g0608800|AK059637
         (389 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0608800  Similar to Peroxisome assembly protein 10 (Per...   644   0.0  
Os07g0608900  Similar to Peroxisome assembly protein 10 (Per...   124   1e-28
Os03g0678400  Zinc finger, RING-type domain containing protein     66   3e-11

>Os07g0608800 Similar to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)
           (Pex10p) (PER8)
          Length = 389

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/357 (91%), Positives = 326/357 (91%)

Query: 33  QPEIMRAAEKDDGYAAHVTEACRDAFRHLFGTRVAVAYQNEIKLLGQSLYYLLTTGSGQQ 92
           QPEIMRAAEKDDGYAAHVTEACRDAFRHLFGTRVAVAYQNEIKLLGQSLYYLLTTGSGQQ
Sbjct: 33  QPEIMRAAEKDDGYAAHVTEACRDAFRHLFGTRVAVAYQNEIKLLGQSLYYLLTTGSGQQ 92

Query: 93  TLGEEYCDISQVATSHGLPPTPARRILFILYQTTVPYLAERISSRIVARGIALEDSQLDD 152
           TLGEEYCDISQVATSHGLPPTPARRILFILYQTTVPYLAERISSRIVARGIALEDSQLDD
Sbjct: 93  TLGEEYCDISQVATSHGLPPTPARRILFILYQTTVPYLAERISSRIVARGIALEDSQLDD 152

Query: 153 HSESDSSSIGTAAQPSPIXXXXXXXXXXXXXXXXXXXVHTLWEWVLRKWPSMLPFAQDFI 212
           HSESDSSSIGTAAQPSPI                   VHTLWEWVLRKWPSMLPFAQDFI
Sbjct: 153 HSESDSSSIGTAAQPSPIRNSPSRSLSFSHLSRLRGRVHTLWEWVLRKWPSMLPFAQDFI 212

Query: 213 QLTIRTNLMFFYFEGLYYHLPKRAAGIRYVFIGKPLNQRPRYQILGIFLLIQLCILGAER 272
           QLTIRTNLMFFYFEGLYYHLPKRAAGIRYVFIGKPLNQRPRYQILGIFLLIQLCILGAER
Sbjct: 213 QLTIRTNLMFFYFEGLYYHLPKRAAGIRYVFIGKPLNQRPRYQILGIFLLIQLCILGAER 272

Query: 273 LRRSNLSTIASSINQIXXXXXXXXXXXXVPVLNEDGNIISDIRHGKTADLATSSEASSGK 332
           LRRSNLSTIASSINQI            VPVLNEDGNIISDIRHGKTADLATSSEASSGK
Sbjct: 273 LRRSNLSTIASSINQISSGGYPSSRGRGVPVLNEDGNIISDIRHGKTADLATSSEASSGK 332

Query: 333 SKCTLCLSTRQNPTATTCGHVFCWSCIMEWCNEKPECPLCRTPITHSSLICIYHSDF 389
           SKCTLCLSTRQNPTATTCGHVFCWSCIMEWCNEKPECPLCRTPITHSSLICIYHSDF
Sbjct: 333 SKCTLCLSTRQNPTATTCGHVFCWSCIMEWCNEKPECPLCRTPITHSSLICIYHSDF 389



>Os07g0608900 Similar to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)
           (Pex10p) (PER8)
          Length = 85

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query: 227 GLYYHLPKRAAGIRYVFIGKPLNQRPRYQILGIFLLIQLCILGAERLRRSNLSTIASSIN 286
           GLYYHLPKRAAGIRYVFIGKP+ QRPRYQILGIFLLIQLCILGAERLRRSNLSTIASSIN
Sbjct: 9   GLYYHLPKRAAGIRYVFIGKPMIQRPRYQILGIFLLIQLCILGAERLRRSNLSTIASSIN 68

Query: 287 QI 288
           QI
Sbjct: 69  QI 70



>Os03g0678400 Zinc finger, RING-type domain containing protein
          Length = 233

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 317 GKTADLATSSEASSGKSKCTLCLSTRQNPTATTCGHVFCWSCIMEWCN---EKPECPLCR 373
           G++    T+ +A+ G  +C +C    Q P  T CGH+FCW CI  W +     PECP+C+
Sbjct: 6   GESTSSGTNGDAAGGSFECNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCK 65

Query: 374 TPITHSSLICIY 385
             +    L+ +Y
Sbjct: 66  AVVEEDKLVPLY 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,037,386
Number of extensions: 404199
Number of successful extensions: 1417
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)