BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0602800 Os07g0602800|Os07g0602800
(336 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0602800 Glycerophosphoryl diester phosphodiesterase fa... 613 e-176
Os03g0603600 Glycerophosphoryl diester phosphodiesterase fa... 360 e-100
Os01g0763600 Glycerophosphoryl diester phosphodiesterase fa... 354 5e-98
>Os07g0602800 Glycerophosphoryl diester phosphodiesterase family protein
Length = 336
Score = 613 bits (1582), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/336 (89%), Positives = 301/336 (89%)
Query: 1 MASPCTCNPRTFSGDGWRWWCLSXXXXXXXXXXXXXXXXXXXXXXXLQTSRPFNIAHRGS 60
MASPCTCNPRTFSGDGWRWWCLS LQTSRPFNIAHRGS
Sbjct: 1 MASPCTCNPRTFSGDGWRWWCLSGARRAAARPLVGGGGAGGTPKAPLQTSRPFNIAHRGS 60
Query: 61 NGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXXXXXXXHPEFASRRR 120
NGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFH HPEFASRRR
Sbjct: 61 NGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHDTTLDATTDVADHPEFASRRR 120
Query: 121 TLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRIITFDEFIDTAAGAA 180
TLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRIITFDEFIDTAAGAA
Sbjct: 121 TLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRIITFDEFIDTAAGAA 180
Query: 181 SRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYMSPAWAARPVFIQSF 240
SRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYMSPAWAARPVFIQSF
Sbjct: 181 SRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYMSPAWAARPVFIQSF 240
Query: 241 APTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYMREYVVGVGPWKDTD 300
APTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYMREYVVGVGPWKDTD
Sbjct: 241 APTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYMREYVVGVGPWKDTD 300
Query: 301 PYAEYDYWINDVGDLFTDFPASLRRYQEWTTAGRKG 336
PYAEYDYWINDVGDLFTDFPASLRRYQEWTTAGRKG
Sbjct: 301 PYAEYDYWINDVGDLFTDFPASLRRYQEWTTAGRKG 336
>Os03g0603600 Glycerophosphoryl diester phosphodiesterase family protein
Length = 391
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/331 (53%), Positives = 223/331 (67%), Gaps = 49/331 (14%)
Query: 47 LQTSRPFNIAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXX 106
LQT RP+NIAHRGSNGE+PEET AAY+RAI+EGADFIE+D+ ATKDGHL+CFH
Sbjct: 39 LQTFRPYNIAHRGSNGEIPEETTAAYLRAIEEGADFIESDILATKDGHLICFHDVILDAT 98
Query: 107 XXXXXHPEFASRRRTLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRI 166
EFA+R+RT EV+ NVTG+F+ DFTL ELK+LR KQRY FRD+ YNG +I
Sbjct: 99 TDIANRTEFANRKRTYEVERQNVTGWFVVDFTLEELKSLRVKQRYNFRDQQYNG--KYQI 156
Query: 167 ITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYM 226
ITFDE+I A A RVVGIYPE+KNP+F+N V+W DGKKFEDKFV L + GY G YM
Sbjct: 157 ITFDEYI-LIALYADRVVGIYPELKNPIFINEHVKWSDGKKFEDKFVQTLLKYGYKGEYM 215
Query: 227 SPAWAARPVFIQSFAPTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYM 286
S W +P+FIQSFAP+SL+Y + +T+SP + L+DDTTVRT+DT+QSY E+TSD +L ++
Sbjct: 216 SEDWLKQPLFIQSFAPSSLIYMSNMTNSPKIFLIDDTTVRTQDTNQSYYEITSDAYLAFI 275
Query: 287 REYVVGVGPWKDT--------------------------------------------DPY 302
R+Y+VG+GPWKDT DPY
Sbjct: 276 RKYIVGIGPWKDTIVPPINNYLGPPTDLVARAHALNLQVHPYTFRNENMFLHFDFHQDPY 335
Query: 303 AEYDYWINDVG--DLFTDFPASLRRYQEWTT 331
EY+YW+ ++G LFTDF +L R+QE TT
Sbjct: 336 LEYEYWLGEIGVDGLFTDFTGTLHRFQECTT 366
>Os01g0763600 Glycerophosphoryl diester phosphodiesterase family protein
Length = 391
Score = 354 bits (908), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 182/335 (54%), Positives = 221/335 (65%), Gaps = 49/335 (14%)
Query: 47 LQTSRPFNIAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXX 106
LQT RP+NIAHRGSNGE+PEETAAAY+RAI+EGADFIE D+ A+KDG L+CFH
Sbjct: 39 LQTFRPYNIAHRGSNGEIPEETAAAYLRAIEEGADFIETDILASKDGALICFHDVTLDAT 98
Query: 107 XXXXXHPEFASRRRTLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRI 166
EF++RRRT EV+W N TG+F+ DFTL ELKTL+ QRY FRD+ YNG S I
Sbjct: 99 TDVASRKEFSNRRRTYEVEWFNATGWFVVDFTLEELKTLKVNQRYPFRDQQYNGKFS--I 156
Query: 167 ITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYM 226
ITF+EFI A A SR VGIYPE+K+PVF+N+ V+W GKKFEDKFV L + GY G+YM
Sbjct: 157 ITFEEFISIALDA-SRTVGIYPEMKDPVFINKHVKWDGGKKFEDKFVDTLLKYGYKGQYM 215
Query: 227 SPAWAARPVFIQSFAPTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYM 286
S W +P+FIQSFAPTSLV+A+ LTDSP + L+DD +VRT+DT+QSY ++TSD++L Y+
Sbjct: 216 SENWLKQPLFIQSFAPTSLVHASKLTDSPKIFLIDDFSVRTQDTNQSYWDITSDDYLAYI 275
Query: 287 REYVVGVGPWKDT--------------------------------------------DPY 302
YVVG+GPWKDT DPY
Sbjct: 276 SNYVVGLGPWKDTVVPAAKNYTMAPTDLVARAHAHNLQVHPYTYRNENQFLHLNFHQDPY 335
Query: 303 AEYDYWINDVG--DLFTDFPASLRRYQEWTTAGRK 335
AEYD+WIN +G LFTDF SL RYQE K
Sbjct: 336 AEYDFWINSMGVDGLFTDFTGSLHRYQELVAPHAK 370
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,004,665
Number of extensions: 422289
Number of successful extensions: 1222
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)