Os07g0602800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycerophosphoryl diester phosphodiesterase family protein.
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Os07g0602800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycerophosphoryl diester phosphodiesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.7 | 0.527 | 3.48 | -3.02 | 0.157 | 25.1 | -0.303 | -146 | -0.0743 | 13.2 | 995.7 | 1302 | -- | -- |
| 129.84 | 0.535 | 3 | -0.142 | 0.144 | 0.453 | -0.368 | -- | -0.0767 | 13.8 | 997.6 | 1393 | -- | -- |
| 125.99 | 0.523 | 3.46 | -2.94 | 0.16 | 25.2 | -- | -147 | -0.0762 | 12.4 | 995.8 | 1378 | -- | -- |
| 127.8 | 0.53 | 2.99 | -0.188 | 0.135 | 0.512 | -- | -- | -0.0565 | 13.2 | 1003 | 404 | -- | -- |
| 127.56 | 0.526 | 3.47 | -2.95 | -- | 25.5 | -- | -148 | -0.0794 | -- | 995.9 | 1368 | -- | -- |
| 130.81 | 0.536 | 3 | -0.125 | 0.146 | -- | -0.367 | -- | -0.0838 | 13.9 | -- | -- | -- | -- |
| 131.31 | 0.537 | 3 | -0.137 | 0.146 | -- | -- | -- | -0.0863 | 13.3 | -- | -- | -- | -- |
| 128.92 | 0.531 | 2.99 | -0.194 | -- | 0.525 | -- | -- | -0.0584 | -- | 1003 | 404 | -- | -- |
| 127.26 | 0.525 | 2.99 | -- | 0.204 | 1 | -- | -- | -0.0753 | 13.2 | 994.6 | 579 | -- | -- |
| 132.62 | 0.538 | 3 | -0.142 | -- | -- | -- | -- | -0.0893 | -- | -- | -- | -- | -- |
| 131.81 | 0.537 | 2.99 | -- | 0.148 | -- | -- | -- | -0.0711 | 13.3 | -- | -- | -- | -- |
| 128.72 | 0.528 | 2.99 | -- | -- | 1.06 | -- | -- | -0.0616 | -- | 994.6 | 575 | -- | -- |
| 133.16 | 0.539 | 3 | -- | -- | -- | -- | -- | -0.0735 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.87 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 4 | 110.79 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 2 |
| 85 | 120.06 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 20 | 1 |
| 98 | 121.12 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 100 | 121.12 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 115 | 121.75 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 22 | 2 |
| 118 | 121.85 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 120 | 121.95 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 22 | 1 |
| 134 | 122.13 | wind | 5.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 148 | 122.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 172 | 122.84 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 10 |
| 196 | 122.99 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 236 | 123.37 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 246 | 123.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 248 | 123.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 264 | 123.63 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 273 | 123.64 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 16 |
| 281 | 123.66 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 291 | 123.72 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 348 | 124.03 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 365 | 124.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 366 | 124.05 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 376 | 124.05 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 388 | 124.09 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 389 | 124.09 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 2 |
| 409 | 124.17 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 423 | 124.23 | wind | 5.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 433 | 124.28 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 458 | 124.28 | atmosphere | 995.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 536 | 124.34 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 543 | 124.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 551 | 124.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 553 | 124.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 567 | 124.44 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 575 | 124.46 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 21 | 15 |
| 578 | 124.48 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 595 | 124.54 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 615 | 124.57 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 16 |
| 639 | 124.64 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 643 | 124.65 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 659 | 124.68 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 668 | 124.69 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 679 | 124.70 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 2 | 13 |
| 723 | 124.79 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 727 | 124.80 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 761 | 124.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 763 | 124.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 764 | 124.86 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 766 | 124.87 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 8 | NA |
| 804 | 124.98 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 815 | 125.00 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 818 | 125.00 | atmosphere | 1000.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 825 | 125.01 | atmosphere | 995.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 831 | 125.01 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 852 | 125.04 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 3 | NA |
| 864 | 125.06 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 890 | 125.14 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 920 | 125.17 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 921 | 125.17 | atmosphere | 995.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 945 | 125.22 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 963 | 125.23 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 983 | 125.26 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 990 | 125.27 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 998 | 125.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 999 | 125.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 23 |