BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0602800 Os07g0602800|Os07g0602800
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74210.1 | chr1:27910396-27912785 FORWARD LENGTH=393 360 e-100
AT5G08030.1 | chr5:2575152-2576770 REVERSE LENGTH=373 358 2e-99
AT5G58050.1 | chr5:23494498-23497386 REVERSE LENGTH=754 61 1e-09
AT5G58170.1 | chr5:23540261-23543092 REVERSE LENGTH=751 60 2e-09
>AT1G74210.1 | chr1:27910396-27912785 FORWARD LENGTH=393
Length = 392
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 220/331 (66%), Gaps = 49/331 (14%)
Query: 47 LQTSRPFNIAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXX 106
LQTSRP+NIAHRGSNGE+PEET AAY++AI+EG DFIE D+ ++KDG L+CFH
Sbjct: 39 LQTSRPYNIAHRGSNGEIPEETTAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDET 98
Query: 107 XXXXXHPEFASRRRTLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRI 166
H EFA R+RT +VQ N+TGFF DFTL ELK LR KQRYAFRD+ YNG I
Sbjct: 99 TNVASHKEFADRKRTYDVQGFNITGFFTFDFTLKELKQLRIKQRYAFRDQQYNGMYP--I 156
Query: 167 ITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYM 226
ITF+EF+ T A A RVVGIYPEIKNPV +N+ V+W GKKFEDK V LK+ GYGG Y+
Sbjct: 157 ITFEEFL-TIARDAPRVVGIYPEIKNPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYL 215
Query: 227 SPAWAARPVFIQSFAPTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYM 286
S W +P+FIQSFAPTSLVY + LTDSP VLL+DD T+ T+DT+Q+Y E+TSD + +Y+
Sbjct: 216 SKKWLKKPLFIQSFAPTSLVYISNLTDSPKVLLIDDVTMPTQDTNQTYAEITSDAYFEYI 275
Query: 287 REYVVGVGPWKDT--------------------------------------------DPY 302
++YVVG+GPWKDT DPY
Sbjct: 276 KQYVVGIGPWKDTIVPVNNNYVLAPTDLVKRAHAHNLQVHPYTYRNEHEFLHYNFSQDPY 335
Query: 303 AEYDYWINDVG--DLFTDFPASLRRYQEWTT 331
EYDYWIN++G LFTDF SL +QEWT+
Sbjct: 336 KEYDYWINEIGVDGLFTDFTGSLHNFQEWTS 366
>AT5G08030.1 | chr5:2575152-2576770 REVERSE LENGTH=373
Length = 372
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 217/331 (65%), Gaps = 49/331 (14%)
Query: 47 LQTSRPFNIAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXX 106
LQTSRP+N+AHRGSNGELPEETA AYMRAI+EGADFIE D+ ++KDG L+C H
Sbjct: 39 LQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADFIETDILSSKDGVLICHHDVNLDDT 98
Query: 107 XXXXXHPEFASRRRTLEVQWTNVTGFFITDFTLAELKTLRSKQRYAFRDRSYNGGESSRI 166
H EFA R+RT EVQ N+TGFF DFTL ELKTL +KQRY FRD+ YNG I
Sbjct: 99 TDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELKTLGAKQRYPFRDQQYNG--KFPI 156
Query: 167 ITFDEFIDTAAGAASRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGYGGRYM 226
ITFDE+I A A RVVGIYPEIKNPVF+N+QV+W DGKKFEDKFV LK+ GY G Y+
Sbjct: 157 ITFDEYISIALDAP-RVVGIYPEIKNPVFMNQQVKWADGKKFEDKFVETLKKYGYKGSYL 215
Query: 227 SPAWAARPVFIQSFAPTSLVYAAGLTDSPMVLLVDDTTVRTEDTSQSYDEVTSDEHLDYM 286
S W +P+FIQSFA TSLVY + +TDSP + L+DD T+ TEDT+++Y E+TSD +LDY+
Sbjct: 216 SEDWLKQPIFIQSFAATSLVYISNMTDSPKLFLIDDVTILTEDTNKTYAEITSDAYLDYI 275
Query: 287 REYVVGVGPWKDT--------------------------------------------DPY 302
+ YV+G+GPWKDT DPY
Sbjct: 276 KPYVIGIGPWKDTIVPVNNNRLMTPTDLVARAHSRNLQVHPYTYRNENQFLHLEFNQDPY 335
Query: 303 AEYDYWINDVG--DLFTDFPASLRRYQEWTT 331
EYDYW+N +G LFTDF SL YQE +
Sbjct: 336 LEYDYWLNKIGVDGLFTDFTGSLHNYQELKS 366
>AT5G58050.1 | chr5:23494498-23497386 REVERSE LENGTH=754
Length = 753
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 55 IAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXXXXXXXHPE 114
I H G++G+ P T AY +AID+GAD I+ V +KDG + F
Sbjct: 358 ITHNGASGDYPGCTDLAYQKAIDDGADIIDCSVQMSKDG--IAFCHDAADLSASTTARTT 415
Query: 115 FASRRRTL-EVQWTNVTGFFITDFTLAELKTLRSKQRYAFR----DRSYNGGESSRIITF 169
F SR ++ E+Q TN G F D T AE+++++ + F R+ + + T
Sbjct: 416 FMSRATSVPEIQPTN--GIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKFTTL 473
Query: 170 DEFIDTAAGAASRVVGIYPEIKNPVFV 196
+F++ G A V G+ I+N ++
Sbjct: 474 ADFLEL--GKAKAVTGVLINIQNAAYL 498
>AT5G58170.1 | chr5:23540261-23543092 REVERSE LENGTH=751
Length = 750
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 55 IAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHXXXXXXXXXXXXHPE 114
I H G++G+ P T AY +A+D+GAD I+ V +KDG C
Sbjct: 358 ITHNGASGDYPGCTDLAYQKAVDDGADVIDCSVQMSKDGIAFCHDAADLTASTTAMTI-- 415
Query: 115 FASRRRTL-EVQWTNVTGFFITDFTLAELKTLRSKQRYAFR----DRSYNGGESSRIITF 169
F SR ++ E+Q TN G F D T AE+++++ + F R+ + + IT
Sbjct: 416 FMSRATSVPEIQPTN--GIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKFITL 473
Query: 170 DEFIDTAAGAASRVVGIYPEIKNPVFV 196
+F+D + A V G+ I+N ++
Sbjct: 474 ADFLDFSKAKA--VTGVMINIENAAYL 498
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,799,338
Number of extensions: 260492
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 5
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)