BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0601600 Os07g0601600|Os07g0601600
         (410 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0601600  Similar to A.thaliana gene induced upon woundi...   731   0.0  
Os03g0436400  Similar to A.thaliana gene induced upon woundi...   504   e-143
Os03g0422600  Conserved hypothetical protein                      424   e-119

>Os07g0601600 Similar to A.thaliana gene induced upon wounding stress
          Length = 410

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/410 (88%), Positives = 363/410 (88%)

Query: 1   MPPMSMSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPG 60
           MPPMSMSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPG
Sbjct: 1   MPPMSMSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPG 60

Query: 61  GPWKVYALXXXXXXXXXXXXXAAVTHLCXXXXXXXXXXXXXXPLTDITHVFYVALAAPHL 120
           GPWKVYAL             AAVTHLC              PLTDITHVFYVALAAPHL
Sbjct: 61  GPWKVYALSRRPPPPWSPPPPAAVTHLCVDLADAAAVAEALAPLTDITHVFYVALAAPHL 120

Query: 121 AEARSREANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPVETPFSEDMP 180
           AEARSREANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPVETPFSEDMP
Sbjct: 121 AEARSREANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPVETPFSEDMP 180

Query: 181 RHDYPNFYYDQEDVLFDAVTXXXXXXXXRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLC 240
           RHDYPNFYYDQEDVLFDAVT        RRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLC
Sbjct: 181 RHDYPNFYYDQEDVLFDAVTSSSSSSSSRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLC 240

Query: 241 VYAAICRKERRELRWPGSLGAWEGFSNASDADLVAEQQIWXXXXXXXXXXXXFNCSNGDI 300
           VYAAICRKERRELRWPGSLGAWEGFSNASDADLVAEQQIW            FNCSNGDI
Sbjct: 241 VYAAICRKERRELRWPGSLGAWEGFSNASDADLVAEQQIWAAVADAAAKNEAFNCSNGDI 300

Query: 301 YKWKQLWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVAN 360
           YKWKQLWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVAN
Sbjct: 301 YKWKQLWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVAN 360

Query: 361 WWFVDALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410
           WWFVDALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP
Sbjct: 361 WWFVDALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410



>Os03g0436400 Similar to A.thaliana gene induced upon wounding stress
          Length = 396

 Score =  504 bits (1298), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/406 (62%), Positives = 295/406 (72%), Gaps = 11/406 (2%)

Query: 6   MSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPGGPWKV 65
           MSWWWAGAIGA +KR +      +P F+SVALVVGSTGIVGTSL+DILPL DTPGGPWKV
Sbjct: 1   MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV 60

Query: 66  YALXXXXXXXXXXXXXAAVTHLCXXXXXXXXXXXXXXPLTDITHVFYVALAAPHLAEARS 125
           YA+              AVTHL               PLTDITHVFYVA +A H  EA++
Sbjct: 61  YAVSRRPLPPWSPPASPAVTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSA-HPTEAQN 119

Query: 126 REANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPV-ETPFSEDMPRHDY 184
           RE N+ MLRN+L+ VVP CPAL HV LQTG KHYIGP E IGK+   + PF+EDM R D 
Sbjct: 120 REVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDC 179

Query: 185 PNFYYDQEDVLFDAVTXXXXXXXXRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLCVYAA 244
           PNFYYD EDVLF+ V+        RR  AV+WSVHRP+++FGFSPRSAMNVV SLCVYAA
Sbjct: 180 PNFYYDLEDVLFNEVS--------RRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAA 231

Query: 245 ICRKERRELRWPGSLGAWEGFSNASDADLVAEQQIWXXXXXXXXXXXXFNCSNGDIYKWK 304
           ICRKE   LRWPGS  AWEGFS+ASDADL+AE +IW            FNCSNGD+YKWK
Sbjct: 232 ICRKEGAVLRWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFAKNEA-FNCSNGDLYKWK 290

Query: 305 QLWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFV 364
            LWP+LA +FGVEW+GYEGEE    L  AM+GKEAVWAEIV E  L+ TEL E+ NWWFV
Sbjct: 291 LLWPMLADQFGVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFV 350

Query: 365 DALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410
           DA+F  + E +D+MNKSKEHGFLGFRNT+ SF  WI+KMK+++IVP
Sbjct: 351 DAVFGVRSEHLDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP 396



>Os03g0422600 Conserved hypothetical protein
          Length = 313

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/329 (65%), Positives = 239/329 (72%), Gaps = 37/329 (11%)

Query: 84  VTHLCXXXXXXXXXXXXXXPLTDITHVFYVALAAPHLAEARSREANAGMLRNVLAAVVPT 143
           VTH+C              PLTDITHVFYVA A     E ++REAN+ MLRNVL+AVVP 
Sbjct: 12  VTHICVDLADPAAVSAALAPLTDITHVFYVAWAPHFFEEDQNREANSRMLRNVLSAVVPN 71

Query: 144 CPALAHVALQTGSKHYIGPPESIGKLPVETPFSEDMPRHDY-PNFYYDQEDVLFDAVTXX 202
           CPAL HV+LQTGSKHYIGPPESIGK  +ETPFSEDMPR D  PN YYDQED LFDAV+  
Sbjct: 72  CPALVHVSLQTGSKHYIGPPESIGKFTIETPFSEDMPRLDNCPNLYYDQEDALFDAVS-- 129

Query: 203 XXXXXXRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLCVYAAICRKE-RRELRWPGSLGA 261
                 R AA ++WSVHRPSL+FGFSP+SAMNVVC+LCVYAAICRKE  R+LRWPGSLGA
Sbjct: 130 --RSRRRGAAVISWSVHRPSLVFGFSPQSAMNVVCTLCVYAAICRKEGGRKLRWPGSLGA 187

Query: 262 WEGFSNASDADLVAEQQIWXXXXXXXXXXXXFNCSNGDIYKWKQLWPVLAGKFGVEWAGY 321
           WEGFSNASDADLVAEQ IW            +NCSNGD+YKWKQLW VLAG+FG+EW+GY
Sbjct: 188 WEGFSNASDADLVAEQHIW-AAVDPAARNEAYNCSNGDVYKWKQLWTVLAGRFGMEWSGY 246

Query: 322 EGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFVDALFMDKWEFVDTMNKS 381
           EGEE R                              VANWWFVDALFMDKWEF+DTMNKS
Sbjct: 247 EGEESR------------------------------VANWWFVDALFMDKWEFLDTMNKS 276

Query: 382 KEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410
           KEHGFLGFRNT++SF  WIDK++LY+IVP
Sbjct: 277 KEHGFLGFRNTVKSFGTWIDKLRLYKIVP 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,322,352
Number of extensions: 592389
Number of successful extensions: 1916
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1904
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)