Os03g0436400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to A.thaliana gene induced upon wounding stress.
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Os03g0436400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to A.thaliana gene induced upon wounding stress.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.57 | 0.303 | 11.7 | -0.0487 | 0.82 | 0.624 | 0.00349 | 0.679 | -0.00853 | 12.8 | 59.98 | 2670 | -- | -- |
| 42.05 | 0.302 | 11.7 | -0.0744 | 0.823 | 0.752 | 0.0111 | -- | 0.00712 | 12.7 | 59 | 2667 | -- | -- |
| 41.57 | 0.3 | 11.7 | -0.0486 | 0.82 | 0.623 | -- | 0.678 | -0.00857 | 12.8 | 59.99 | 2669 | -- | -- |
| 41.99 | 0.302 | 11.7 | -0.0843 | 0.817 | 0.749 | -- | -- | -0.000866 | 12.8 | 58.67 | 2669 | -- | -- |
| 79.37 | 0.415 | 11.8 | -0.0258 | -- | 0.584 | -- | 0.647 | -0.116 | -- | 59.32 | 7475 | -- | -- |
| 50.91 | 0.334 | 11.8 | 0.0802 | 0.754 | -- | -0.157 | -- | -0.128 | 12.8 | -- | -- | -- | -- |
| 51.01 | 0.334 | 11.8 | 0.0744 | 0.754 | -- | -- | -- | -0.129 | 12.8 | -- | -- | -- | -- |
| 78.67 | 0.413 | 11.8 | -0.00596 | -- | 0.633 | -- | -- | -0.0171 | -- | 65.35 | 4649 | -- | -- |
| 42.13 | 0.302 | 11.7 | -- | 0.823 | 0.725 | -- | -- | 0.00342 | 12.8 | 58.97 | 2667 | -- | -- |
| 86.54 | 0.435 | 11.8 | 0.0469 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 51.16 | 0.335 | 11.8 | -- | 0.753 | -- | -- | -- | -0.137 | 12.8 | -- | -- | -- | -- |
| 78.67 | 0.413 | 11.8 | -- | -- | 0.633 | -- | -- | -0.0145 | -- | 65.16 | 4640 | -- | -- |
| 86.6 | 0.434 | 11.8 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 5 | 40.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 8 | 41.03 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 10 | 41.04 | wind | 7.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 11 | 41.09 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 24 | 41.48 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 38 | 41.66 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 39 | 41.67 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 62 | 41.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 64 | 41.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 74 | 42.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 79 | 42.07 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 81 | 42.08 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 86 | 42.12 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 88 | 42.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 92 | 42.14 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 11 |
| 97 | 42.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 104 | 42.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 114 | 42.22 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 123 | 42.24 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 124 | 42.25 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 128 | 42.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 143 | 42.36 | wind | 7.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 146 | 42.37 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 149 | 42.38 | wind | 9.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 151 | 42.39 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 153 | 42.39 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 164 | 42.42 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 178 | 42.46 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 182 | 42.47 | wind | 7.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 188 | 42.48 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 191 | 42.48 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 227 | 42.52 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 230 | 42.53 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 233 | 42.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 234 | 42.53 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 240 | 42.54 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 254 | 42.55 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 276 | 42.57 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 325 | 42.60 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 347 | 42.61 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 355 | 42.62 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 431 | 42.66 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 446 | 42.66 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 548 | 42.70 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 577 | 42.70 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 622 | 42.72 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 656 | 42.72 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 14 | 19 |
| 699 | 42.74 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 742 | 42.75 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 14 | 8 |
| 770 | 42.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 776 | 42.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 799 | 42.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 810 | 42.77 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 832 | 42.78 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 873 | 42.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 964 | 42.82 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 988 | 42.83 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 1 |