BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0436400 Os03g0436400|AK106105
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0436400  Similar to A.thaliana gene induced upon woundi...   779   0.0  
Os07g0601600  Similar to A.thaliana gene induced upon woundi...   513   e-146
Os03g0422600  Conserved hypothetical protein                      407   e-114

>Os03g0436400 Similar to A.thaliana gene induced upon wounding stress
          Length = 396

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/396 (96%), Positives = 381/396 (96%)

Query: 1   MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV 60
           MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV
Sbjct: 1   MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV 60

Query: 61  YAVXXXXXXXXXXXXXXXVTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSAHPTEAQNR 120
           YAV               VTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSAHPTEAQNR
Sbjct: 61  YAVSRRPLPPWSPPASPAVTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSAHPTEAQNR 120

Query: 121 EVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDCP 180
           EVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDCP
Sbjct: 121 EVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDCP 180

Query: 181 NFYYDLEDVLFNEVSRRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGAVL 240
           NFYYDLEDVLFNEVSRRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGAVL
Sbjct: 181 NFYYDLEDVLFNEVSRRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGAVL 240

Query: 241 RWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQF 300
           RWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQF
Sbjct: 241 RWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQF 300

Query: 301 GVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRSEH 360
           GVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRSEH
Sbjct: 301 GVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRSEH 360

Query: 361 LDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP 396
           LDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP
Sbjct: 361 LDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP 396



>Os07g0601600 Similar to A.thaliana gene induced upon wounding stress
          Length = 410

 Score =  513 bits (1321), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/406 (66%), Positives = 314/406 (77%), Gaps = 11/406 (2%)

Query: 1   MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV 60
           MSWWWAGAIGA +KR +      +P F+SVALVVGSTGIVGTSL+DILPL DTPGGPWKV
Sbjct: 6   MSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPGGPWKV 65

Query: 61  YAVXXXXXXXXXXXXXXXVTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSA-HPTEAQN 119
           YA+               VTHL +DLAD+AAVAE L PLTDITHVFYVA +A H  EA++
Sbjct: 66  YALSRRPPPPWSPPPPAAVTHLCVDLADAAAVAEALAPLTDITHVFYVALAAPHLAEARS 125

Query: 120 REVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDC 179
           RE N+ MLRN+L+ VVP CPAL HV LQTG KHYIGP E IGK+   + PF+EDM R D 
Sbjct: 126 REANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPV-ETPFSEDMPRHDY 184

Query: 180 PNFYYDLEDVLFNEVS--------RRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAA 231
           PNFYYD EDVLF+ V+        RR  AV+WSVHRP+++FGFSPRSAMNVV SLCVYAA
Sbjct: 185 PNFYYDQEDVLFDAVTSSSSSSSSRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLCVYAA 244

Query: 232 ICRKEGAVLRWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFA-KNEAFNCSNGDLYKWK 290
           ICRKE   LRWPGS  AWEGFS+ASDADL+AE +IWAAV   A KNEAFNCSNGD+YKWK
Sbjct: 245 ICRKERRELRWPGSLGAWEGFSNASDADLVAEQQIWAAVADAAAKNEAFNCSNGDIYKWK 304

Query: 291 LLWPMLADQFGVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFV 350
            LWP+LA +FGVEW+GYEGEE    L  AM+GKEAVWAEIV E  L+ TEL E+ NWWFV
Sbjct: 305 QLWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFV 364

Query: 351 DAVFGVRSEHLDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP 396
           DA+F  + E +D+MNKSKEHGFLGFRNT+ SF  WI+KMK+++IVP
Sbjct: 365 DALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410



>Os03g0422600 Conserved hypothetical protein
          Length = 313

 Score =  407 bits (1046), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/325 (64%), Positives = 242/325 (74%), Gaps = 38/325 (11%)

Query: 79  VTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSAHP-TEAQNREVNSAMLRNILSVVVPN 137
           VTH+ +DLAD AAV+  L PLTDITHVFYVAW+ H   E QNRE NS MLRN+LS VVPN
Sbjct: 12  VTHICVDLADPAAVSAALAPLTDITHVFYVAWAPHFFEEDQNREANSRMLRNVLSAVVPN 71

Query: 138 CPALVHVCLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLD-CPNFYYDLEDVLFNEVSR 196
           CPALVHV LQTG KHYIGP E IGK    + PF+EDM RLD CPN YYD ED LF+ VSR
Sbjct: 72  CPALVHVSLQTGSKHYIGPPESIGKFTI-ETPFSEDMPRLDNCPNLYYDQEDALFDAVSR 130

Query: 197 --RDGA--VSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGA-VLRWPGSRVAWEG 251
             R GA  +SWSVHRP++VFGFSP+SAMNVV +LCVYAAICRKEG   LRWPGS  AWEG
Sbjct: 131 SRRRGAAVISWSVHRPSLVFGFSPQSAMNVVCTLCVYAAICRKEGGRKLRWPGSLGAWEG 190

Query: 252 FSDASDADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQFGVEWSGYEGEE 311
           FS+ASDADL+AE  IWAAV+P A+NEA+NCSNGD+YKWK LW +LA +FG+EWSGYEGEE
Sbjct: 191 FSNASDADLVAEQHIWAAVDPAARNEAYNCSNGDVYKWKQLWTVLAGRFGMEWSGYEGEE 250

Query: 312 SSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRSEHLDSMNKSKEHG 371
           S                               + NWWFVDA+F  + E LD+MNKSKEHG
Sbjct: 251 S------------------------------RVANWWFVDALFMDKWEFLDTMNKSKEHG 280

Query: 372 FLGFRNTVNSFNTWIEKMKVFKIVP 396
           FLGFRNTV SF TWI+K++++KIVP
Sbjct: 281 FLGFRNTVKSFGTWIDKLRLYKIVP 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,009,192
Number of extensions: 579447
Number of successful extensions: 1203
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)