Os07g0601600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to A.thaliana gene induced upon wounding stress.
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Os07g0601600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to A.thaliana gene induced upon wounding stress.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.32 | 0.478 | 2.84 | -0.407 | 0.0716 | -0.388 | -0.225 | -2.88 | 0.0556 | 10.9 | 9.013 | 4392 | -- | -- |
| 106.71 | 0.485 | 2.91 | -0.27 | 0.0446 | 0.215 | -0.265 | -- | -0.0044 | 11 | 9.013 | 4392 | -- | -- |
| 103.52 | 0.474 | 2.84 | -0.417 | 0.0744 | -0.39 | -- | -2.91 | 0.0532 | 9.93 | 9.021 | 4391 | -- | -- |
| 106.45 | 0.481 | 2.92 | -0.146 | 0.0539 | 0.199 | -- | -- | -0.0165 | 10.8 | 9.001 | 12434 | -- | -- |
| 103.85 | 0.475 | 2.85 | -0.406 | -- | -0.349 | -- | -2.79 | 0.0534 | -- | 9.006 | 4391 | -- | -- |
| 106.96 | 0.485 | 2.91 | -0.288 | 0.0405 | -- | -0.294 | -- | -0.00968 | 11.6 | -- | -- | -- | -- |
| 107.27 | 0.485 | 2.92 | -0.301 | 0.0559 | -- | -- | -- | -0.0118 | 8.93 | -- | -- | -- | -- |
| 106.61 | 0.481 | 2.92 | -0.135 | -- | 0.212 | -- | -- | -0.0156 | -- | 9.1 | 12428 | -- | -- |
| 106.87 | 0.481 | 2.91 | -- | 0.0628 | 0.241 | -- | -- | -0.028 | 9.42 | 9.052 | 12477 | -- | -- |
| 107.45 | 0.484 | 2.92 | -0.302 | -- | -- | -- | -- | -0.0114 | -- | -- | -- | -- | -- |
| 109.66 | 0.49 | 2.91 | -- | 0.0557 | -- | -- | -- | 0.0218 | 9.33 | -- | -- | -- | -- |
| 106.87 | 0.481 | 2.92 | -- | -- | 0.296 | -- | -- | -0.0143 | -- | 9.012 | 12429 | -- | -- |
| 109.85 | 0.489 | 2.91 | -- | -- | -- | -- | -- | 0.0221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.49 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 2 | 94.49 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 9 | 96.99 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 11 | 98.14 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 16 | 98.23 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 26 | 98.23 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 37 | 98.25 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 40 | 98.27 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 50 | 98.58 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 129 | 98.82 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 161 | 99.00 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 174 | 99.28 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 0 | NA |
| 559 | 99.97 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 608 | 100.80 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 609 | 100.80 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 2 |
| 611 | 100.81 | temperature | 20 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 612 | 100.82 | temperature | 20 | 90 | < th | dose independent | rect. | 20 | 1 |
| 615 | 100.83 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 11 | 1 |
| 639 | 100.99 | humidity | 50 | 10 | > th | dose independent | sin | 8 | NA |
| 757 | 101.51 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 11 | 1 |
| 901 | 102.00 | wind | 9 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 941 | 102.12 | humidity | 80 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 961 | 102.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 964 | 102.32 | wind | 9 | 4320 | > th | dose independent | rect. | 7 | 8 |
| 965 | 102.33 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 966 | 102.33 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 994 | 102.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 998 | 102.45 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 1 |