BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0601600 Os07g0601600|Os07g0601600
         (410 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24220.1  | chr4:12565219-12566474 FORWARD LENGTH=389          387   e-108
AT5G58750.1  | chr5:23728886-23730046 FORWARD LENGTH=387          179   3e-45

>AT4G24220.1 | chr4:12565219-12566474 FORWARD LENGTH=389
          Length = 388

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/405 (49%), Positives = 256/405 (63%), Gaps = 17/405 (4%)

Query: 6   MSWWWAGAIGAARKRHDGGGGEQQPPFRSVALVVGSTGIVGTSLVDILPLPDTPGGPWKV 65
           MSWWWAGAIGAA+K+ D    E    F SVAL++G TGIVG SL +ILPL DTPGGPWKV
Sbjct: 1   MSWWWAGAIGAAKKKLDED--EPSQSFESVALIIGVTGIVGNSLAEILPLSDTPGGPWKV 58

Query: 66  YALXXXXXXXXXXXXXAAVTHLCXXXXXXXXXXXXXXPLTDITHVFYVALAAPHLAEARS 125
           Y +               + ++               PLTD+THVFYV       +E+ +
Sbjct: 59  YGVARRPRPTWNADH--PIDYIQCDVSDAEDTRSKLSPLTDVTHVFYVTWTNRE-SESEN 115

Query: 126 REANAGMLRNVLAAVVPTCPALAHVALQTGSKHYIGPPESIGKLPVETPFSEDMPRHDYP 185
            EAN  MLRNVL A++P  P L HV LQTG+KHY+GP  ++     + PF+EDMPR    
Sbjct: 116 CEANGSMLRNVLQAIIPYAPNLRHVCLQTGTKHYLGPFTNVDGPRHDPPFTEDMPRLQIQ 175

Query: 186 NFYYDQEDVLFDAVTXXXXXXXXRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLCVYAAI 245
           NFYY QED+LF+ +         ++   VTWS+HRP++IFGFSP S MN+V +LCVYAAI
Sbjct: 176 NFYYTQEDILFEEI---------KKIETVTWSIHRPNMIFGFSPYSLMNIVGTLCVYAAI 226

Query: 246 CRKERRELRWPGSLGAWEGFSNASDADLVAEQQIWXXXXXXXXXXXXFNCSNGDIYKWKQ 305
           C+ E   L +PGS  AWEGF  ASDADL+AEQQIW            FNC+N DI+KWK 
Sbjct: 227 CKHEGSPLLFPGSKKAWEGFMTASDADLIAEQQIW-AAVDPYAKNEAFNCNNADIFKWKH 285

Query: 306 LWPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFVD 365
           LW +LA +FG+E  G+E E + +GL   M GKE VW E+V E +L   +L EV  WWF D
Sbjct: 286 LWKILAEQFGIEEYGFE-EGKNLGLVEMMKGKERVWEEMVKENQLQEKKLEEVGVWWFAD 344

Query: 366 ALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410
            +   +   +D+MNKSKE+GFLGFRN+  SF +WIDK K ++IVP
Sbjct: 345 VILGVE-GMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388



>AT5G58750.1 | chr5:23728886-23730046 FORWARD LENGTH=387
          Length = 386

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 34  SVALVVGSTGIVGTSLVDILPLPDTPGGPWKVYALXXXXXXXXXXXXXAAVTHLCXXXXX 93
           +VAL+ G TG+VG  +V  L L   PG  W++Y +               ++  C     
Sbjct: 17  NVALIFGVTGLVGREIVKTL-LMSKPG--WRIYGVARNPEINSMTKMYNFIS--CDLLNA 71

Query: 94  XXXXXXXXXPLTDI-THVFYVALAAPH-LAEARSREANAGMLRNVLAAVVPTCPALAHVA 151
                    PL DI +HVF+V  +    L        N  ML N L A++P    L H +
Sbjct: 72  SETKQRLS-PLQDIVSHVFWVTWSGEFPLDTDECCVQNKTMLMNALDAILPNAKRLKHFS 130

Query: 152 LQTGSKHYIGPPESI---GKLPVETPFSEDMPRHDY-PNFYYDQEDVLFDAVTXXXXXXX 207
           LQTG KHY+   E     G+      +SE+ PR     NFYY  ED+L + +T       
Sbjct: 131 LQTGMKHYVSLVEETMARGEGSSLYYYSEECPRKSSGKNFYYVLEDLLKEKIT------- 183

Query: 208 XRRAAAVTWSVHRPSLIFGFSPRSAMNVVCSLCVYAAICRKERRELRWPGSLGAWE-GFS 266
               ++V WSV RP L+ G S R+  N + SLCVY A+C+       + G+   WE  + 
Sbjct: 184 ---RSSVVWSVQRPGLLMGSSSRTLYNFMGSLCVYGAMCKYLNLPFVFGGTRECWEESYI 240

Query: 267 NASDADLVAEQQIWXXXXXXXXXX-XXFNCSNGDIYKWKQLWPVLAGKFGVEWAGYEGEE 325
           + SD++LVAEQ I+             FN  NG  + WK++WP +  K GV+       +
Sbjct: 241 DGSDSNLVAEQHIFAATSGKVREKGEAFNAINGVGFTWKEIWPEIGKKLGVQVNETTMFD 300

Query: 326 RRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFVDALFMDKWEFVDTMNKSKEHG 385
                   M  ++ VW EIV +EKLV TE+ ++ANW+F+DALF   ++ +    K    G
Sbjct: 301 EGFWFGREMVERKHVWDEIVVKEKLVRTEIEDLANWYFLDALFRCPFKLLGKREKVDRFG 360

Query: 386 FLGFRNTLRSFEAWIDKMKLYRIVP 410
           F     TL S   WID M+  +++P
Sbjct: 361 FKRKYRTLDSVLYWIDVMRDEKLIP 385



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,535,976
Number of extensions: 332665
Number of successful extensions: 616
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,337,553
Effective search space: 2576303877
Effective search space used: 2576303877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)