BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0436400 Os03g0436400|AK106105
         (396 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24220.1  | chr4:12565219-12566474 FORWARD LENGTH=389          463   e-131
AT5G58750.1  | chr5:23728886-23730046 FORWARD LENGTH=387          203   2e-52

>AT4G24220.1 | chr4:12565219-12566474 FORWARD LENGTH=389
          Length = 388

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/398 (56%), Positives = 287/398 (72%), Gaps = 12/398 (3%)

Query: 1   MSWWWAGAIGAVKKRQEENAAATEPSFQSVALVVGSTGIVGTSLLDILPLQDTPGGPWKV 60
           MSWWWAGAIGA KK+ +E+  +   SF+SVAL++G TGIVG SL +ILPL DTPGGPWKV
Sbjct: 1   MSWWWAGAIGAAKKKLDEDEPSQ--SFESVALIIGVTGIVGNSLAEILPLSDTPGGPWKV 58

Query: 61  YAVXXXXXXXXXXXXXXXVTHLHLDLADSAAVAEVLTPLTDITHVFYVAWSAHPTEAQNR 120
           Y V               + ++  D++D+      L+PLTD+THVFYV W+   +E++N 
Sbjct: 59  YGVARRPRPTWNADHP--IDYIQCDVSDAEDTRSKLSPLTDVTHVFYVTWTNRESESENC 116

Query: 121 EVNSAMLRNILSVVVPNCPALVHVCLQTGRKHYIGPFEVIGKIAAP--DPPFTEDMLRLD 178
           E N +MLRN+L  ++P  P L HVCLQTG KHY+GPF     +  P  DPPFTEDM RL 
Sbjct: 117 EANGSMLRNVLQAIIPYAPNLRHVCLQTGTKHYLGPFT---NVDGPRHDPPFTEDMPRLQ 173

Query: 179 CPNFYYDLEDVLFNEVSRRDGAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGA 238
             NFYY  ED+LF E+ + +  V+WS+HRP ++FGFSP S MN+VG+LCVYAAIC+ EG+
Sbjct: 174 IQNFYYTQEDILFEEIKKIE-TVTWSIHRPNMIFGFSPYSLMNIVGTLCVYAAICKHEGS 232

Query: 239 VLRWPGSRVAWEGFSDASDADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLAD 298
            L +PGS+ AWEGF  ASDADLIAE +IWAAV+P+AKNEAFNC+N D++KWK LW +LA+
Sbjct: 233 PLLFPGSKKAWEGFMTASDADLIAEQQIWAAVDPYAKNEAFNCNNADIFKWKHLWKILAE 292

Query: 299 QFGVEWSGYEGEESSFKLADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRS 358
           QFG+E  G+E E  +  L + M GKE VW E+VKEN L + +LEE+  WWF D + GV  
Sbjct: 293 QFGIEEYGFE-EGKNLGLVEMMKGKERVWEEMVKENQLQEKKLEEVGVWWFADVILGVEG 351

Query: 359 EHLDSMNKSKEHGFLGFRNTVNSFNTWIEKMKVFKIVP 396
             +DSMNKSKE+GFLGFRN+ NSF +WI+K K FKIVP
Sbjct: 352 -MIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388



>AT5G58750.1 | chr5:23728886-23730046 FORWARD LENGTH=387
          Length = 386

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 199/381 (52%), Gaps = 23/381 (6%)

Query: 28  QSVALVVGSTGIVGTSLLDILPLQDTPGGPWKVYAVXXXXXXXXXXXXXXXVTHLHLDLA 87
           ++VAL+ G TG+VG  ++  L L   PG  W++Y V               ++    DL 
Sbjct: 16  ENVALIFGVTGLVGREIVKTL-LMSKPG--WRIYGVARNPEINSMTKMYNFIS---CDLL 69

Query: 88  DSAAVAEVLTPLTDI-THVFYVAWSAH-PTEAQNREV-NSAMLRNILSVVVPNCPALVHV 144
           +++   + L+PL DI +HVF+V WS   P +     V N  ML N L  ++PN   L H 
Sbjct: 70  NASETKQRLSPLQDIVSHVFWVTWSGEFPLDTDECCVQNKTMLMNALDAILPNAKRLKHF 129

Query: 145 CLQTGRKHYIGPFEVIGKIAAPDPPFTEDMLRLDCP------NFYYDLEDVLFNEVSRRD 198
            LQTG KHY+    ++ +  A     +      +CP      NFYY LED+L  +++R  
Sbjct: 130 SLQTGMKHYVS---LVEETMARGEGSSLYYYSEECPRKSSGKNFYYVLEDLLKEKITR-- 184

Query: 199 GAVSWSVHRPTVVFGFSPRSAMNVVGSLCVYAAICRKEGAVLRWPGSRVAWE-GFSDASD 257
            +V WSV RP ++ G S R+  N +GSLCVY A+C+       + G+R  WE  + D SD
Sbjct: 185 SSVVWSVQRPGLLMGSSSRTLYNFMGSLCVYGAMCKYLNLPFVFGGTRECWEESYIDGSD 244

Query: 258 ADLIAEHEIWAAV--EPFAKNEAFNCSNGDLYKWKLLWPMLADQFGVEWSGYEGEESSFK 315
           ++L+AE  I+AA   +   K EAFN  NG  + WK +WP +  + GV+ +     +  F 
Sbjct: 245 SNLVAEQHIFAATSGKVREKGEAFNAINGVGFTWKEIWPEIGKKLGVQVNETTMFDEGFW 304

Query: 316 LADAMSGKEAVWAEIVKENDLMDTELEEITNWWFVDAVFGVRSEHLDSMNKSKEHGFLGF 375
               M  ++ VW EIV +  L+ TE+E++ NW+F+DA+F    + L    K    GF   
Sbjct: 305 FGREMVERKHVWDEIVVKEKLVRTEIEDLANWYFLDALFRCPFKLLGKREKVDRFGFKRK 364

Query: 376 RNTVNSFNTWIEKMKVFKIVP 396
             T++S   WI+ M+  K++P
Sbjct: 365 YRTLDSVLYWIDVMRDEKLIP 385



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,853,746
Number of extensions: 364052
Number of successful extensions: 764
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)