BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0583000 Os07g0583000|AK121047
         (67 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0583000  Ribosome associated membrane RAMP4 family protein   102   7e-23
Os12g0514100  Ribosome associated membrane RAMP4 family protein    79   6e-16
Os11g0637400  Ribosome associated membrane RAMP4 family protein    77   4e-15

>Os07g0583000 Ribosome associated membrane RAMP4 family protein
          Length = 67

 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 52/67 (77%)

Query: 1  MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIXXXXXXXXXXXXXXXQIIRT 60
          MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPI               QIIRT
Sbjct: 1  MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIVLGFFVFVVVGSSLFQIIRT 60

Query: 61 AQNAGYF 67
          AQNAGYF
Sbjct: 61 AQNAGYF 67



>Os12g0514100 Ribosome associated membrane RAMP4 family protein
          Length = 68

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 1  MTTSRRLSDRKVARFEKNVTKRGSVPE-TVKKGNDYPVGPIXXXXXXXXXXXXXXXQIIR 59
          MTTSRRL+DRK A+F+KN+TKRGSVPE TVKKGNDYPVGP+               QIIR
Sbjct: 1  MTTSRRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSSLFQIIR 60

Query: 60 TAQNAG 65
          TA + G
Sbjct: 61 TATSGG 66



>Os11g0637400 Ribosome associated membrane RAMP4 family protein
          Length = 98

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 1  MTTSRRLSDRKVARFEKNVTKRGSVPE-TVKKGNDYPVGPIXXXXXXXXXXXXXXXQIIR 59
           TTSRRL+DRK A+F+KN+TKRGSVPE TVKKGNDYPVGP+               QIIR
Sbjct: 31 WTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIR 90

Query: 60 TAQNAG 65
          TA + G
Sbjct: 91 TATSGG 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,490,919
Number of extensions: 33084
Number of successful extensions: 55
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 67
Length of database: 17,035,801
Length adjustment: 39
Effective length of query: 28
Effective length of database: 14,999,455
Effective search space: 419984740
Effective search space used: 419984740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)