Os07g0583000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome associated membrane RAMP4 family protein.
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Os07g0583000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosome associated membrane RAMP4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.85 | 0.304 | 13.6 | -0.39 | 0.675 | -0.477 | -0.121 | -3.24 | -0.0018 | 2.81 | 12.66 | 12062 | -- | -- |
| 51.96 | 0.336 | 13.5 | 0.302 | 0.668 | -0.152 | -0.0984 | -- | 0.205 | 2.8 | 11.15 | 18160 | -- | -- |
| 41.9 | 0.301 | 13.6 | -0.386 | 0.677 | -0.479 | -- | -3.25 | -0.00237 | 2.82 | 12.49 | 12091 | -- | -- |
| 49.9 | 0.329 | 13.5 | 0.427 | 0.752 | -0.333 | -- | -- | 0.253 | 2.91 | 24.13 | 21199 | -- | -- |
| 68.17 | 0.385 | 13.6 | -0.362 | -- | -0.424 | -- | -3.13 | 0.00948 | -- | 12.4 | 11961 | -- | -- |
| 52.32 | 0.339 | 13.5 | 0.198 | 0.664 | -- | -0.135 | -- | 0.145 | 2.85 | -- | -- | -- | -- |
| 52.38 | 0.339 | 13.5 | 0.201 | 0.663 | -- | -- | -- | 0.146 | 2.87 | -- | -- | -- | -- |
| 63.65 | 0.373 | 13.5 | 0.339 | -- | -0.752 | -- | -- | 0.243 | -- | 24.13 | 21199 | -- | -- |
| 50.95 | 0.332 | 13.5 | -- | 0.715 | -0.284 | -- | -- | 0.209 | 2.72 | 31.91 | 12320 | -- | -- |
| 77.8 | 0.412 | 13.5 | 0.229 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 53.44 | 0.342 | 13.5 | -- | 0.667 | -- | -- | -- | 0.123 | 2.88 | -- | -- | -- | -- |
| 66.6 | 0.381 | 13.5 | -- | -- | -0.701 | -- | -- | 0.201 | -- | 24.13 | 21199 | -- | -- |
| 79.18 | 0.415 | 13.5 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.26 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 2 | 41.27 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 15 | 41.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 34 | 41.45 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 35 | 41.45 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 50 | 41.50 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 11 |
| 56 | 41.51 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 66 | 41.54 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 82 | 41.56 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 101 | 41.58 | temperature | 25 | 14400 | < th | dose dependent | sin | 19 | NA |
| 105 | 41.58 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 175 | 41.63 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 292 | 41.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 338 | 41.73 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 375 | 41.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 378 | 41.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 382 | 41.75 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 495 | 41.80 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 521 | 41.81 | temperature | 10 | 14400 | > th | dose dependent | sin | 19 | NA |
| 587 | 41.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 615 | 41.84 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 620 | 41.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 710 | 41.87 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 759 | 41.88 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 771 | 41.88 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 820 | 41.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 857 | 41.90 | temperature | 25 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 865 | 41.91 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 21 |