Os11g0637400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome associated membrane RAMP4 family protein.
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Os11g0637400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosome associated membrane RAMP4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.27 | 0.513 | 7.57 | 0.486 | 1.41 | -0.541 | -0.333 | -0.969 | -0.819 | 19.6 | 21.13 | 411 | -- | -- |
| 121.58 | 0.514 | 7.54 | 0.711 | 1.37 | -0.448 | -0.68 | -- | -0.765 | 19.5 | 21.6 | 305 | -- | -- |
| 119.5 | 0.509 | 7.57 | 0.462 | 1.42 | -0.551 | -- | -1.11 | -0.827 | 19.6 | 21.11 | 439 | -- | -- |
| 123.12 | 0.517 | 7.54 | 0.724 | 1.38 | -0.456 | -- | -- | -0.761 | 19.5 | 21.62 | 305 | -- | -- |
| 215.54 | 0.688 | 7.53 | 0.547 | -- | -0.472 | -- | -0.512 | -0.839 | -- | 21.11 | 439 | -- | -- |
| 132.02 | 0.539 | 7.57 | 0.556 | 1.33 | -- | -0.687 | -- | -0.896 | 19.7 | -- | -- | -- | -- |
| 133.37 | 0.541 | 7.57 | 0.573 | 1.33 | -- | -- | -- | -0.897 | 19.7 | -- | -- | -- | -- |
| 216.6 | 0.688 | 7.51 | 0.688 | -- | -0.449 | -- | -- | -0.799 | -- | 21.7 | 7 | -- | -- |
| 136.2 | 0.544 | 7.57 | -- | 1.37 | -0.338 | -- | -- | -0.873 | 19.6 | 21.6 | 305 | -- | -- |
| 228.78 | 0.707 | 7.54 | 0.557 | -- | -- | -- | -- | -0.916 | -- | -- | -- | -- | -- |
| 142.03 | 0.557 | 7.58 | -- | 1.32 | -- | -- | -- | -0.96 | 19.8 | -- | -- | -- | -- |
| 228.55 | 0.706 | 7.53 | -- | -- | -0.386 | -- | -- | -0.902 | -- | 21.16 | 12 | -- | -- |
| 236.95 | 0.718 | 7.55 | -- | -- | -- | -- | -- | -0.977 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 2 | 108.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 3 | 109.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 10 | 110.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 11 | 110.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 74 | 111.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 107 | 112.19 | temperature | 25 | 10 | < th | dose dependent | sin | 4 | NA |
| 149 | 113.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 252 | 115.56 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 9 |
| 263 | 115.68 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 7 |
| 281 | 115.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 309 | 116.37 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 17 |
| 326 | 116.61 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 337 | 116.77 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 376 | 117.14 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 11 |
| 379 | 117.15 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 405 | 117.39 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 1 |
| 434 | 117.64 | temperature | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 459 | 117.82 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 487 | 118.04 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 495 | 118.10 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 16 |
| 543 | 118.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 580 | 118.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 13 |
| 600 | 118.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 601 | 118.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 609 | 118.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 692 | 119.17 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 11 |
| 714 | 119.27 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 6 |
| 741 | 119.38 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 11 |
| 744 | 119.39 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 18 |
| 819 | 119.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 860 | 119.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 950 | 120.09 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 954 | 120.09 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 965 | 120.13 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 8 | 1 |