Os12g0514100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome associated membrane RAMP4 family protein.
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Os12g0514100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosome associated membrane RAMP4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.27 | 0.287 | 13.6 | 0.0436 | 0.699 | -1.27 | -0.538 | 0.881 | 0.156 | 11.6 | 25.88 | 112 | -- | -- |
| 38.12 | 0.288 | 13.5 | 0.195 | 0.698 | -1.33 | -0.76 | -- | 0.201 | 11.8 | 25.3 | 104 | -- | -- |
| 38.25 | 0.288 | 13.6 | -0.0535 | 0.693 | -1.27 | -- | 1.27 | 0.134 | 11.4 | 26.28 | 110 | -- | -- |
| 40.52 | 0.296 | 13.5 | 0.158 | 0.702 | -1.35 | -- | -- | 0.194 | 11.6 | 25.3 | 111 | -- | -- |
| 57.42 | 0.355 | 13.6 | -0.179 | -- | -1.66 | -- | 1.53 | 0.0532 | -- | 28.59 | 10 | -- | -- |
| 64.01 | 0.375 | 13.5 | 0.52 | 0.907 | -- | -0.804 | -- | 0.471 | 12.4 | -- | -- | -- | -- |
| 66.76 | 0.383 | 13.5 | 0.488 | 0.909 | -- | -- | -- | 0.467 | 12.3 | -- | -- | -- | -- |
| 60.67 | 0.363 | 13.6 | 0.071 | -- | -1.7 | -- | -- | 0.0973 | -- | 27.84 | 6 | -- | -- |
| 41.08 | 0.299 | 13.5 | -- | 0.713 | -1.41 | -- | -- | 0.17 | 11.5 | 25.24 | 133 | -- | -- |
| 118.72 | 0.509 | 13.5 | 0.458 | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
| 73.05 | 0.4 | 13.5 | -- | 0.902 | -- | -- | -- | 0.412 | 12.3 | -- | -- | -- | -- |
| 60.79 | 0.363 | 13.6 | -- | -- | -1.72 | -- | -- | 0.0856 | -- | 27.83 | 6 | -- | -- |
| 124.26 | 0.52 | 13.5 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 37.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 3 | 37.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 5 | 37.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 8 | 37.70 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 29 | 38.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 41 | 38.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 44 | 38.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 87 | 38.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 125 | 39.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 273 | 40.71 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 289 | 40.82 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 297 | 40.85 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 329 | 40.93 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 347 | 40.96 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 360 | 41.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 364 | 41.04 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 367 | 41.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 411 | 41.19 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 433 | 41.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 435 | 41.28 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 441 | 41.29 | humidity | 50 | 43200 | > th | dose independent | sin | 6 | NA |
| 443 | 41.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 469 | 41.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 475 | 41.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 481 | 41.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 483 | 41.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 487 | 41.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 497 | 41.35 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 530 | 41.39 | humidity | 50 | 43200 | < th | dose independent | sin | 6 | NA |
| 554 | 41.40 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 679 | 41.48 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 740 | 41.49 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 920 | 41.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 930 | 41.70 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 945 | 41.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 1 |