BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0580700 Os07g0580700|AK119427
(1030 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0580700 Conserved hypothetical protein 1983 0.0
Os01g0176800 Conserved hypothetical protein 743 0.0
Os01g0677900 Conserved hypothetical protein 78 3e-14
>Os07g0580700 Conserved hypothetical protein
Length = 1030
Score = 1983 bits (5137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1030 (94%), Positives = 973/1030 (94%)
Query: 1 MGTNLLFLPEFLLYTCMMASSCFAYQFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN 60
MGTNLLFLPEFLLYTCMMASSCFAYQFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN
Sbjct: 1 MGTNLLFLPEFLLYTCMMASSCFAYQFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN 60
Query: 61 AYRVKRVKRELSFEKGDWRQDAGTDPLVPFDGGDAAEDGRRPPLDPLRLATFVVTHVDDD 120
AYRVKRVKRELSFEKGDWRQDAGTDPLVPFDGGDAAEDGRRPPLDPLRLATFVVTHVDDD
Sbjct: 61 AYRVKRVKRELSFEKGDWRQDAGTDPLVPFDGGDAAEDGRRPPLDPLRLATFVVTHVDDD 120
Query: 121 DERRARNAVNVSGLLVLTISRTSASPEIGYHVPVVSSPVFELLPGSTKLRIVFEGVYTEA 180
DERRARNAVNVSGLLVLTISRTSASPEIGYHVPVVSSPVFELLPGSTKLRIVFEGVYTEA
Sbjct: 121 DERRARNAVNVSGLLVLTISRTSASPEIGYHVPVVSSPVFELLPGSTKLRIVFEGVYTEA 180
Query: 181 ARSGNGGGERVLCMVGAGVLPTRGADGADPWGWAKNSGRAGFQPPVATDESMLLVLRYPK 240
ARSGNGGGERVLCMVGAGVLPTRGADGADPWGWAKNSGRAGFQPPVATDESMLLVLRYPK
Sbjct: 181 ARSGNGGGERVLCMVGAGVLPTRGADGADPWGWAKNSGRAGFQPPVATDESMLLVLRYPK 240
Query: 241 ELTLTTRAVVGEMRSTRAMSDAAYFDTVKLVSGPTWNRQYEFRRPEELAAAAGTCRPLTS 300
ELTLTTRAVVGEMRSTRAMSDAAYFDTVKLVSGPTWNRQYEFRRPEELAAAAGTCRPLTS
Sbjct: 241 ELTLTTRAVVGEMRSTRAMSDAAYFDTVKLVSGPTWNRQYEFRRPEELAAAAGTCRPLTS 300
Query: 301 SDDGGNRARDLYKGRHLCDVLERYIHGVITARPTWRHCNSTATGAPCPFEMDRAEDAAIV 360
SDDGGNRARDLYKGRHLCDVLERYIHGVITARPTWRHCNSTATGAPCPFEMDRAEDAAIV
Sbjct: 301 SDDGGNRARDLYKGRHLCDVLERYIHGVITARPTWRHCNSTATGAPCPFEMDRAEDAAIV 360
Query: 361 GIVLHDLRCLGYDLDMAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNA 420
GIVLHDLRCLGYDLDMAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNA
Sbjct: 361 GIVLHDLRCLGYDLDMAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNA 420
Query: 421 SAGEVSMVACRGIGGKACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARSSLSF 480
SAGEVSMVACRGIGGKACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARSSLSF
Sbjct: 421 SAGEVSMVACRGIGGKACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARSSLSF 480
Query: 481 RQRMPPPRLQRCVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCG 540
RQRMPPPRLQRCVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCG
Sbjct: 481 RQRMPPPRLQRCVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCG 540
Query: 541 GNGDGKRSLADLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT 600
GNGDGKRSLADLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT
Sbjct: 541 GNGDGKRSLADLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT 600
Query: 601 TRSSAIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVH 660
TRSSAIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVH
Sbjct: 601 TRSSAIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVH 660
Query: 661 HLPWXXXXXXXXXXXXXGMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFD 720
HLPW GMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFD
Sbjct: 661 HLPWRSSSARRELELEEGMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFD 720
Query: 721 TVKLRAQPVRYPRRWPDFVSRAIVDSXXXXXXXXXXXXXXXXQLHHLKHHADVAPYVSLV 780
TVKLRAQPVRYPRRWPDFVSRAIVDS QLHHLKHHADVAPYVSLV
Sbjct: 721 TVKLRAQPVRYPRRWPDFVSRAIVDSVLCVVLLTATIAAALCQLHHLKHHADVAPYVSLV 780
Query: 781 MLGVQALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKI 840
MLGVQALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKI
Sbjct: 781 MLGVQALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKI 840
Query: 841 LAVAEFLLTLCIAWKVXXXXXXXXXXXPGEAARVPSDGKVFVYCXXXXXXXXXXXXXXXX 900
LAVAEFLLTLCIAWKV PGEAARVPSDGKVFVYC
Sbjct: 841 LAVAEFLLTLCIAWKVRRSRARLLARSPGEAARVPSDGKVFVYCSSAHLALFVVVLALNS 900
Query: 901 XRDATVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSFYVGITAARLLPRVYDLVRPTP 960
RDATVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSFYVGITAARLLPRVYDLVRPTP
Sbjct: 901 SRDATVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSFYVGITAARLLPRVYDLVRPTP 960
Query: 961 VADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSLAGAVFVQQRWNYAIVSRMGNS 1020
VADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSLAGAVFVQQRWNYAIVSRMGNS
Sbjct: 961 VADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSLAGAVFVQQRWNYAIVSRMGNS 1020
Query: 1021 SQQQKLHHIF 1030
SQQQKLHHIF
Sbjct: 1021 SQQQKLHHIF 1030
>Os01g0176800 Conserved hypothetical protein
Length = 1093
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1050 (45%), Positives = 603/1050 (57%), Gaps = 95/1050 (9%)
Query: 35 HSYLRFADVKRQCRSVLTSASELADNAYRVKRVKRELSFEKGDWRQDAGTD-----PLVP 89
H Y+RFADVKRQC+SVL+SA+EL +A R + ELSF KGDW+ D D PL+P
Sbjct: 45 HEYVRFADVKRQCKSVLSSAAELTFDANRANGLMPELSFVKGDWKHDGDGDGGGGAPLLP 104
Query: 90 FDGGDAAEDGRRPPL-DPLRLATFVVTHVDDDDERRARNAVNVSGLLVLTISRTSASPEI 148
FDG D AED DPL LA+F +THVD RR R A+NVSG+L + ISR PE+
Sbjct: 105 FDGTDVAEDAAAGAARDPLPLASFSLTHVDA--ARRGRTALNVSGVLGVAISRNGTGPEM 162
Query: 149 GYHVPVVSSPVFELLPGSTKLRIVFEGVYTEAARSGNGGGERVLCMVGAGVLPTRGADGA 208
G +V SP F++ PG+T+L+++ EGVYTE N GE VLCMVG VLP RG D A
Sbjct: 163 GPYV----SPEFKVWPGNTELKVLLEGVYTE-----NDDGESVLCMVGDAVLPARGGDAA 213
Query: 209 DPWGWAKNSGRAGFQPPVATDESMLLVLRYPKELTLTTRAVVGEMRSTRAMSDAAYFDTV 268
+PWGWAK+S R FQPP+ D ++LLVLRYPK LTLTTRAV GE+ ST + AAYFD V
Sbjct: 214 NPWGWAKHSDRDRFQPPITKDGNILLVLRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAV 273
Query: 269 KLVSGPTWNRQYEFRRPEELAAAAGTCRPLTSSDD---GGNRARDLYKGRHLCDVLERYI 325
L+S Y+F EEL A C+P DD GG R LYKG C +L+R+
Sbjct: 274 HLLSQLGAYSNYQFGS-EELVGTA--CKPHPYRDDVLAGGGGDRGLYKGTSFCGILDRFT 330
Query: 326 -HGVITARPTWRHCNSTATGAPC----PFEMDRAEDA-----AIVGIVLHDLRCLGYDLD 375
V+ P WR CN+T A C PFE D+A DA A V IV+ ++RC +
Sbjct: 331 SEDVLAVVPNWR-CNTT-DDALCRRLGPFETDKAVDATDGGFAGVRIVMQEVRC---EPR 385
Query: 376 MAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNASAGEVSMVACRGIGG 435
G +VS VFRA+ P EH YTA +R+ L GAT+SAEGVW AS+G++ MVAC G+G
Sbjct: 386 TDGGEISARVSAVFRAVPPWEHAYTAAKRSGLGGATMSAEGVWRASSGQLCMVACLGVGA 445
Query: 436 KACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARS--SLSFRQRMPPPRL--QR 491
KACH RVCL TFS T R + +G+IT++ GGGA L+F++ + P L +
Sbjct: 446 KACHSRVCLYLQTTFSATRRSITVGQITSI-----GGGAAHFPPLTFQRTVHPMELWSRF 500
Query: 492 CVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCGGN-GDGKRSLA 550
V+G P+ Y+YTK K AGEFLRR S P D +IA+SL LSYP G+ D SL+
Sbjct: 501 GVTGGEPLSLAYSYTKTKQAGEFLRR-SEPFDFGTVIAKSL-LSYPRKSGDAADETTSLS 558
Query: 551 DLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT------TRSS 604
+LA+ LTL A+P F P G ERP L LEV LG L+ R PA+ T + +S
Sbjct: 559 NLAEELTLHVAAVPDPF-PRGRFERPFLQLEVLSLGSLVGRASPATFPGTPAAVGQSMAS 617
Query: 605 AIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVHHLPW 664
+ L +LNVSAELTI GD V S +SLEGVY+ DGRMYLIGCR + PW
Sbjct: 618 SSSSTTTKLDATAILNVSAELTISGDAYVNVSTLSLEGVYNPVDGRMYLIGCRRI-QAPW 676
Query: 665 XXXXXXXXXXXXXGMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFDTVKL 724
GMDCSIEV+VEYPP T W + TA+V IASTR GDDPL F+ L
Sbjct: 677 --RAFSAMGGVEEGMDCSIEVRVEYPPTTARWLINPTAKVHIASTRGGGDDPLRFNATAL 734
Query: 725 RAQPVRYPRRWPDFVSRAIVDSXXXXXXXXXXXXXXXXQLHHLKHHADVAPYVSLVMLGV 784
+ P+ Y + D +SR V+ QL ++K H DV PYVS+VMLGV
Sbjct: 735 QTLPILYREQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSHTDVMPYVSVVMLGV 794
Query: 785 QALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKILAVA 844
QA+G +PL G EAL AR+ PPP SY +D + Y +D KIL +A
Sbjct: 795 QAVGYSVPLITGAEALFARIAASS--GDGGATPPP--SYEVDKSQLYWTIDCVVKILILA 850
Query: 845 EFLLTLCIAWKVXXXXXXXXXXXPGEAARVPSDGKVFVYCXXXXXXXXXXXXXX------ 898
FLLTL + KV P E RVPSD KV VY
Sbjct: 851 AFLLTLRLVQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAVVLAAHYVSVL 910
Query: 899 -------XXXRDA------------TVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSF 939
DA T+E+++GL QDMFLLPQVIGN W +NC+PL +
Sbjct: 911 ARPVRSEASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWRINCRPLKTGY 970
Query: 940 YVGITAARLLPRVYDLVRPTPVADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSL 999
Y G+TA RLLP VYD VR + F+++ T+ F+ R+GDV +PLAAV+L
Sbjct: 971 YAGLTAVRLLPHVYDYVRAPAINPYFAEEYEFVNTSL-----DFYSRSGDVAIPLAAVAL 1025
Query: 1000 AGAVFVQQRWNYAIVSRMGNSSQQQKLHHI 1029
A AV+VQQRWNY I+S+ +QQ+KL H+
Sbjct: 1026 AAAVYVQQRWNYKIISKT-VKTQQKKLQHL 1054
>Os01g0677900 Conserved hypothetical protein
Length = 765
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 147/406 (36%), Gaps = 76/406 (18%)
Query: 412 LSAEGVWNASAGEVSMVACRGIGGKA----CHFRVCLSFPATFSITGRDMMLGEITTVDV 467
L A+G W S G + + ACR + C R+ FPA +SI R + G I
Sbjct: 319 LVADGFWKPSQGRLCLRACRTVRSTVRESDCGIRIHFWFPAVWSIQQRSFVAGMIRNTRS 378
Query: 468 NETGGGARSSLSFRQRMPPPRLQRCVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREI 527
++ G + S + R G L + +Y+YT+V+ A + N S R
Sbjct: 379 DDDGDTNKMSGAISVSRTGFR------GDLSDI-KYHYTRVEDAKNYYHSNPELSKERN- 430
Query: 528 IARSLPLSYPNCGGNGDGKRSLADLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQ 587
G G S D A L + SP V
Sbjct: 431 -------------GRFPGNYSYRDFAFSLYITTHGGYGYASP------------VTLGSA 465
Query: 588 LIERFMPASDDATTRSSAIPGDEPCLQEQRLLNVSAELTIFGDLRVASSA---------- 637
+++ +DDA +R + + +QRLL+VS E I RV SS
Sbjct: 466 MVDGGTLTADDAFSRHAVAE-----MIKQRLLSVSYEFDIHLYRRVNSSRAWNVSRVPDR 520
Query: 638 --MSLEGVYDREDGRMYLIGCRDVHHLPWXXXXXXXXXXXXXGMDCSIEVKVEYPPPTTH 695
+S EGVYD + G + ++GCR ++ DC I V V+ P
Sbjct: 521 WRVSAEGVYDTKSGTLCMVGCRVIN----------------SSSDCQILVTVQLPALGGE 564
Query: 696 WFVRSTARVQIASTRVAGDDPLHFDTVKLRAQPVRYPRRWPDFVSRAIVDSXXXXXXXXX 755
S + ++ S D L F+T+ A + +SR +
Sbjct: 565 DGTGSISSLRKKS------DTLFFETLGFAAYGAQPAIEAAQAISRVDTERIMLVTSMTL 618
Query: 756 XXXXXXXQLHHLKHHADVAPYVSLVMLGVQALGLVMPLFAGMEALL 801
QL H + + D P S+ ML V ALG ++PL EA+
Sbjct: 619 SCVFLVLQLRHARKNPDALPATSITMLAVLALGYMIPLVVNYEAMF 664
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,159,044
Number of extensions: 1675378
Number of successful extensions: 4020
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3997
Number of HSP's successfully gapped: 4
Length of query: 1030
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 919
Effective length of database: 11,240,047
Effective search space: 10329603193
Effective search space used: 10329603193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 161 (66.6 bits)