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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0677900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.19 (0.0496) R2 : 0.606
β1 : 1.8 (0.243) R2dD : 0.109 R2D : 0.241
β2 : 0.987 (0.106) R2dC : 0.0754 R2C : 0.0793
β3 : -1.76 (0.205) R2dE : 0.183 R2E : 0.407
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.513 (0.135) R2dN8 : 0.0336 R2N8 : 0.0726
σ : 0.834
deviance : 320.84
__
_____
C
peak time of C : 23.4
E
wheather : radiation
threshold : 3.584
memory length : 47520
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.69 0.843 4.88 3.65 0.984 -1.81 0.675 -4.7 1.17 23.3 0.7105 23049 -- --
319.97 0.833 5.18 1.86 0.947 -1.78 0.48 -- 0.563 23.1 3.416 47520 -- --
321.02 0.834 4.88 3.53 1.01 -1.78 -- -4.64 1.18 23.4 0.9 27289 -- --
320.84 0.834 5.19 1.8 0.987 -1.76 -- -- 0.513 23.4 3.584 47520 -- --
361.37 0.885 4.86 3.25 -- -1.89 -- -4.37 1.15 -- 1.634 34242 -- --
370.42 0.902 5 3.37 1.02 -- 0.727 -- 1.34 23.4 -- -- -- --
372.69 0.904 5.01 3.34 1.02 -- -- -- 1.34 23.5 -- -- -- --
377.65 0.905 5.08 3.18 -- -1.47 -- -- 0.839 -- 4.855 31319 -- --
355.88 0.879 5.32 -- 0.975 -2.88 -- -- -0.0659 23.4 2.934 47520 -- --
437.76 0.978 4.98 3.37 -- -- -- -- 1.35 -- -- -- -- --
667.45 1.21 5.09 -- 1.06 -- -- -- 0.965 23.7 -- -- -- --
415.17 0.949 5.3 -- -- -2.92 -- -- -0.0661 -- 2.789 47520 -- --
737.6 1.27 5.07 -- -- -- -- -- 0.974 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.66 wind 1.0 14400 < th dose dependent rect. 23 4
5 309.29 wind 1.0 14400 < th dose dependent rect. 22 17
16 310.27 wind 1.0 14400 < th dose dependent rect. 22 12
17 310.28 wind 1.0 14400 < th dose independent rect. 22 5
18 310.31 wind 1.0 43200 < th dose independent rect. 12 2
32 310.83 wind 1.0 14400 < th dose dependent rect. 5 22
41 311.24 wind 1.0 14400 < th dose dependent rect. 8 23
63 311.70 humidity 80.0 43200 < th dose independent rect. 18 2
65 311.72 wind 1.0 43200 > th dose independent rect. 12 2
67 311.74 wind 1.0 14400 < th dose dependent rect. 15 23
71 311.78 humidity 80.0 43200 > th dose independent rect. 18 2
72 311.78 wind 1.0 14400 < th dose dependent rect. 12 22
83 312.03 humidity 90.0 14400 < th dose independent rect. 24 5
86 312.08 wind 1.0 14400 < th dose dependent sin 9 NA
93 312.11 wind 1.0 14400 < th dose independent rect. 22 12
94 312.12 humidity 80.0 43200 > th dose dependent rect. 6 1
96 312.13 wind 1.0 14400 < th dose independent rect. 5 22
103 312.17 wind 1.0 14400 < th dose dependent no NA NA
108 312.26 precipitation 0.1 43200 > th dose dependent rect. 3 1
110 312.28 wind 1.0 14400 < th dose independent rect. 22 18
114 312.34 wind 1.0 14400 < th dose dependent rect. 18 16
119 312.39 humidity 90.0 43200 < th dose independent rect. 4 3
120 312.41 precipitation 0.1 43200 < th dose independent rect. 3 1
121 312.41 precipitation 0.1 43200 < th dose dependent rect. 3 1
124 312.45 humidity 90.0 14400 < th dose independent rect. 24 1
127 312.46 wind 1.0 14400 < th dose independent rect. 8 1
129 312.47 wind 1.0 14400 < th dose dependent rect. 1 23
130 312.48 humidity 80.0 43200 < th dose independent rect. 17 4
136 312.55 wind 1.0 14400 < th dose dependent rect. 15 19
146 312.65 precipitation 0.1 43200 > th dose independent rect. 3 1
148 312.67 wind 1.0 43200 < th dose independent rect. 22 1
154 312.74 precipitation 0.1 43200 > th dose independent rect. 23 1
155 312.74 precipitation 0.1 43200 < th dose independent rect. 23 1
156 312.74 precipitation 0.1 43200 > th dose dependent rect. 23 1
157 312.74 precipitation 0.1 43200 < th dose dependent rect. 23 1
159 312.75 humidity 80.0 43200 > th dose independent rect. 17 4
168 312.82 wind 1.0 43200 > th dose independent rect. 22 1
170 312.84 wind 1.0 43200 < th dose dependent rect. 12 2
193 313.14 wind 1.0 14400 < th dose dependent rect. 18 9
212 313.29 wind 1.0 14400 > th dose independent rect. 22 5
216 313.30 atmosphere 1010.0 43200 > th dose dependent rect. 18 1
221 313.33 wind 1.0 14400 < th dose dependent rect. 5 11
224 313.34 wind 1.0 14400 < th dose dependent rect. 8 19
226 313.35 humidity 80.0 43200 > th dose dependent rect. 20 1
227 313.36 wind 1.0 14400 < th dose dependent rect. 16 11
232 313.41 humidity 70.0 43200 > th dose dependent rect. 18 2
240 313.48 atmosphere 1010.0 43200 > th dose dependent rect. 13 1
268 313.66 wind 1.0 14400 > th dose independent rect. 5 22
271 313.66 atmosphere 1010.0 43200 > th dose dependent rect. 13 6
273 313.67 atmosphere 1010.0 43200 > th dose dependent rect. 13 8
336 313.84 atmosphere 1010.0 43200 > th dose dependent rect. 20 1
350 313.89 humidity 80.0 14400 > th dose dependent rect. 24 6
372 313.97 atmosphere 1010.0 43200 > th dose dependent sin 18 NA
417 314.08 wind 1.0 14400 < th dose independent rect. 12 21
465 314.19 atmosphere 1015.0 43200 > th dose independent rect. 1 2
476 314.21 wind 1.0 14400 < th dose independent rect. 18 16
516 314.30 atmosphere 1015.0 43200 > th dose dependent rect. 22 6
635 314.49 atmosphere 1010.0 43200 > th dose dependent no NA NA
652 314.51 radiation 1.0 43200 < th dose independent rect. 18 12
653 314.51 wind 1.0 14400 < th dose independent rect. 15 23
659 314.51 atmosphere 1010.0 43200 > th dose dependent rect. 23 23
664 314.52 atmosphere 1010.0 43200 > th dose dependent rect. 17 23
671 314.53 atmosphere 1010.0 43200 > th dose dependent rect. 20 23
702 314.58 atmosphere 1015.0 43200 > th dose dependent rect. 2 1
703 314.58 atmosphere 1010.0 43200 > th dose dependent rect. 5 1
750 314.65 wind 1.0 14400 < th dose independent rect. 8 23
800 314.74 atmosphere 1015.0 43200 > th dose independent rect. 23 1
805 314.75 wind 1.0 14400 < th dose independent no NA NA
806 314.75 atmosphere 1010.0 43200 > th dose independent rect. 15 1
813 314.77 atmosphere 1015.0 43200 > th dose independent rect. 23 4
814 314.77 atmosphere 1010.0 43200 > th dose dependent rect. 3 3
826 314.79 wind 1.0 14400 < th dose independent sin 9 NA
827 314.79 atmosphere 1015.0 43200 < th dose independent rect. 1 1
874 314.90 wind 1.0 14400 < th dose independent rect. 5 11
891 314.94 atmosphere 1015.0 43200 < th dose independent rect. 23 1
909 314.97 wind 1.0 14400 > th dose independent rect. 22 11
910 314.97 radiation 10.0 43200 < th dose dependent rect. 17 10
913 314.98 wind 1.0 14400 > th dose independent rect. 22 18
922 315.00 radiation 10.0 43200 < th dose dependent rect. 17 2
925 315.00 radiation 10.0 43200 < th dose dependent rect. 17 5
926 315.00 radiation 10.0 43200 < th dose dependent rect. 17 7
947 315.04 radiation 1.0 43200 > th dose independent rect. 18 12
949 315.04 humidity 80.0 14400 > th dose dependent rect. 1 2
966 315.07 wind 1.0 14400 > th dose independent rect. 22 21
990 315.13 wind 1.0 14400 < th dose independent rect. 15 18