Os01g0176800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0176800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.08 | 0.702 | 5.85 | 0.974 | 0.576 | -1.83 | 0.581 | -2.38 | -0.35 | 18.6 | 19.76 | 3243 | -- | -- |
| 220.25 | 0.691 | 5.76 | 1.09 | 0.593 | -1.14 | 0.562 | -- | -0.238 | 18.9 | 21.8 | 2249 | -- | -- |
| 223.92 | 0.697 | 5.85 | 0.963 | 0.579 | -1.82 | -- | -2.38 | -0.349 | 18.5 | 19.76 | 3243 | -- | -- |
| 220.43 | 0.691 | 5.76 | 0.996 | 0.608 | -1.08 | -- | -- | -0.24 | 18.7 | 22 | 1972 | -- | -- |
| 238.42 | 0.719 | 5.86 | 1.21 | -- | -2.33 | -- | -3.15 | -0.317 | -- | 18.98 | 4410 | -- | -- |
| 260.94 | 0.757 | 5.84 | 0.556 | 0.569 | -- | 0.441 | -- | -0.604 | 18.4 | -- | -- | -- | -- |
| 261.42 | 0.757 | 5.84 | 0.551 | 0.571 | -- | -- | -- | -0.602 | 18.4 | -- | -- | -- | -- |
| 236.08 | 0.716 | 5.76 | 0.952 | -- | -1.06 | -- | -- | -0.277 | -- | 22.15 | 1489 | -- | -- |
| 241.48 | 0.724 | 5.8 | -- | 0.535 | -0.803 | -- | -- | -0.418 | 18.7 | 22.3 | 1420 | -- | -- |
| 278.36 | 0.78 | 5.83 | 0.536 | -- | -- | -- | -- | -0.614 | -- | -- | -- | -- | -- |
| 269.42 | 0.768 | 5.85 | -- | 0.564 | -- | -- | -- | -0.664 | 18.4 | -- | -- | -- | -- |
| 256.43 | 0.746 | 5.79 | -- | -- | -0.833 | -- | -- | -0.419 | -- | 22.36 | 1421 | -- | -- |
| 285.94 | 0.789 | 5.84 | -- | -- | -- | -- | -- | -0.674 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 218.06 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 4 | 219.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 7 | 220.37 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 8 | 220.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 9 | 220.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 10 | 220.68 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 12 | 220.72 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 14 | 220.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 23 | 221.05 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 26 | 221.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 49 | 221.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 50 | 221.73 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 57 | 221.87 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 75 | 222.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 85 | 222.17 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 102 | 222.26 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 107 | 222.30 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 110 | 222.32 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 118 | 222.37 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 134 | 222.48 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 135 | 222.48 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 165 | 222.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 190 | 222.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 193 | 222.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 221 | 222.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 245 | 223.07 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 324 | 223.48 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 332 | 223.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 368 | 223.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 379 | 223.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 380 | 223.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 400 | 223.91 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 402 | 223.94 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 502 | 224.34 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 522 | 224.43 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 525 | 224.45 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 561 | 224.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 562 | 224.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 818 | 225.42 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 854 | 225.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 859 | 225.51 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 865 | 225.53 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 877 | 225.56 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 881 | 225.58 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 900 | 225.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 928 | 225.71 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 954 | 225.79 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 992 | 225.90 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 993 | 225.90 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |