BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0176800 Os01g0176800|J100055F19
(1093 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0176800 Conserved hypothetical protein 2067 0.0
Os07g0580700 Conserved hypothetical protein 763 0.0
Os02g0688001 129 1e-29
Os05g0557500 Conserved hypothetical protein 110 4e-24
Os01g0678100 Conserved hypothetical protein 97 7e-20
>Os01g0176800 Conserved hypothetical protein
Length = 1093
Score = 2067 bits (5356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1019/1093 (93%), Positives = 1019/1093 (93%)
Query: 1 MVSRXXXXXXXXXXXXXXXXXXFDPFHRDANPMGGGAGQGPFIPHEYVRFADVKRQCKSV 60
MVSR FDPFHRDANPMGGGAGQGPFIPHEYVRFADVKRQCKSV
Sbjct: 1 MVSRSLQLVGALLLPLLAVVSSFDPFHRDANPMGGGAGQGPFIPHEYVRFADVKRQCKSV 60
Query: 61 LSSAAELTFDANRANGLMPELSFVKGDWKHXXXXXXXXXAPLLPFDGTDVXXXXXXXXXX 120
LSSAAELTFDANRANGLMPELSFVKGDWKH APLLPFDGTDV
Sbjct: 61 LSSAAELTFDANRANGLMPELSFVKGDWKHDGDGDGGGGAPLLPFDGTDVAEDAAAGAAR 120
Query: 121 XXXXXXSFSLTHVDAARRGRTALNVSGVLGVAISRNGTGPEMGPYVSPEFKVWPGNTELK 180
SFSLTHVDAARRGRTALNVSGVLGVAISRNGTGPEMGPYVSPEFKVWPGNTELK
Sbjct: 121 DPLPLASFSLTHVDAARRGRTALNVSGVLGVAISRNGTGPEMGPYVSPEFKVWPGNTELK 180
Query: 181 VLLEGVYTENDDGESVLCMVGDAVLPARGGDAANPWGWAKHSDRDRFQPPITKDGNILLV 240
VLLEGVYTENDDGESVLCMVGDAVLPARGGDAANPWGWAKHSDRDRFQPPITKDGNILLV
Sbjct: 181 VLLEGVYTENDDGESVLCMVGDAVLPARGGDAANPWGWAKHSDRDRFQPPITKDGNILLV 240
Query: 241 LRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAVHLLSQLGAYSNYQFGSEELVGTACKPH 300
LRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAVHLLSQLGAYSNYQFGSEELVGTACKPH
Sbjct: 241 LRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAVHLLSQLGAYSNYQFGSEELVGTACKPH 300
Query: 301 PYRDDVLAGGGGDRGLYKGTSFCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFETD 360
PYRDDVLAGGGGDRGLYKGTSFCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFETD
Sbjct: 301 PYRDDVLAGGGGDRGLYKGTSFCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFETD 360
Query: 361 KAVDATDGGFAGVRIVMQEVRCEPRTDGGEISARVSAVFRAVPPWEHAYTAAKRSGLGGA 420
KAVDATDGGFAGVRIVMQEVRCEPRTDGGEISARVSAVFRAVPPWEHAYTAAKRSGLGGA
Sbjct: 361 KAVDATDGGFAGVRIVMQEVRCEPRTDGGEISARVSAVFRAVPPWEHAYTAAKRSGLGGA 420
Query: 421 TMSAEGVWRASSGQLCMVACLGVGAKACHSRVCLYLQTTFSATRRSITVGQITSIGGGAA 480
TMSAEGVWRASSGQLCMVACLGVGAKACHSRVCLYLQTTFSATRRSITVGQITSIGGGAA
Sbjct: 421 TMSAEGVWRASSGQLCMVACLGVGAKACHSRVCLYLQTTFSATRRSITVGQITSIGGGAA 480
Query: 481 HFPPLTFQRTVHPMELWSRFGVTGGEPLSLAYSYTKTKQAGEFLRRSEPFDFGTVIAKSL 540
HFPPLTFQRTVHPMELWSRFGVTGGEPLSLAYSYTKTKQAGEFLRRSEPFDFGTVIAKSL
Sbjct: 481 HFPPLTFQRTVHPMELWSRFGVTGGEPLSLAYSYTKTKQAGEFLRRSEPFDFGTVIAKSL 540
Query: 541 LSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFERPFLQLEVLSLGSLVGRAS 600
LSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFERPFLQLEVLSLGSLVGRAS
Sbjct: 541 LSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFERPFLQLEVLSLGSLVGRAS 600
Query: 601 PATFPGTPAAVGQSMAXXXXXXXXKLDATAILNVSAELTISGDAYVNVSTLSLEGVYNPV 660
PATFPGTPAAVGQSMA KLDATAILNVSAELTISGDAYVNVSTLSLEGVYNPV
Sbjct: 601 PATFPGTPAAVGQSMASSSSSTTTKLDATAILNVSAELTISGDAYVNVSTLSLEGVYNPV 660
Query: 661 DGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCSIEVRVEYPPTTARWLINPTAKVHIASTR 720
DGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCSIEVRVEYPPTTARWLINPTAKVHIASTR
Sbjct: 661 DGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCSIEVRVEYPPTTARWLINPTAKVHIASTR 720
Query: 721 GGGDDPLRFNATALQTLPILYREQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSH 780
GGGDDPLRFNATALQTLPILYREQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSH
Sbjct: 721 GGGDDPLRFNATALQTLPILYREQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSH 780
Query: 781 TDVMPYVSVVMLGVQAVGYSVPLITGAEALFARIAASSGDGGATPPPSYEVDKSQLYWTI 840
TDVMPYVSVVMLGVQAVGYSVPLITGAEALFARIAASSGDGGATPPPSYEVDKSQLYWTI
Sbjct: 781 TDVMPYVSVVMLGVQAVGYSVPLITGAEALFARIAASSGDGGATPPPSYEVDKSQLYWTI 840
Query: 841 DCVVKXXXXXXXXXXXXXVQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAV 900
DCVVK VQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAV
Sbjct: 841 DCVVKILILAAFLLTLRLVQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAV 900
Query: 901 VLAAHYVSVLARPVRSEASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWR 960
VLAAHYVSVLARPVRSEASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWR
Sbjct: 901 VLAAHYVSVLARPVRSEASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWR 960
Query: 961 INCRPLKTGYYAGLTAVRLLPHVYDYVRAPAINPYFAEEYEFVNTSLDFYSRSGDVAIPX 1020
INCRPLKTGYYAGLTAVRLLPHVYDYVRAPAINPYFAEEYEFVNTSLDFYSRSGDVAIP
Sbjct: 961 INCRPLKTGYYAGLTAVRLLPHVYDYVRAPAINPYFAEEYEFVNTSLDFYSRSGDVAIPL 1020
Query: 1021 XXXXXXXXXYVQQRWNYKIISKTVKTQQKKLQHLGSRVYERLPSMSSANFEAELVAGVNE 1080
YVQQRWNYKIISKTVKTQQKKLQHLGSRVYERLPSMSSANFEAELVAGVNE
Sbjct: 1021 AAVALAAAVYVQQRWNYKIISKTVKTQQKKLQHLGSRVYERLPSMSSANFEAELVAGVNE 1080
Query: 1081 GVGHGLRRDASLS 1093
GVGHGLRRDASLS
Sbjct: 1081 GVGHGLRRDASLS 1093
>Os07g0580700 Conserved hypothetical protein
Length = 1030
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/1050 (46%), Positives = 607/1050 (57%), Gaps = 95/1050 (9%)
Query: 45 HEYVRFADVKRQCKSVLSSAAELTFDANRANGLMPELSFVKGDWKHXXXXXXXXXAPLLP 104
H Y+RFADVKRQC+SVL+SA+EL +A R + ELSF KGDW+ PL+P
Sbjct: 35 HSYLRFADVKRQCRSVLTSASELADNAYRVKRVKRELSFEKGDWRQDAGTD-----PLVP 89
Query: 105 FDGTDVXXXXXXXXXXXXXXXXSFSLTHVDA--ARRGRTALNVSGVLGVAISRNGTGPEM 162
FDG D +F +THVD RR R A+NVSG+L + ISR PE+
Sbjct: 90 FDGGDAAEDGRRPPLDPLRLA-TFVVTHVDDDDERRARNAVNVSGLLVLTISRTSASPEI 148
Query: 163 GPYV----SPEFKVWPGNTELKVLLEGVYTE-----NDDGESVLCMVGDAVLPARGGDAA 213
G +V SP F++ PG+T+L+++ EGVYTE N GE VLCMVG VLP RG D A
Sbjct: 149 GYHVPVVSSPVFELLPGSTKLRIVFEGVYTEAARSGNGGGERVLCMVGAGVLPTRGADGA 208
Query: 214 NPWGWAKHSDRDRFQPPITKDGNILLVLRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAV 273
+PWGWAK+S R FQPP+ D ++LLVLRYPK LTLTTRAV GE+ ST + AAYFD V
Sbjct: 209 DPWGWAKNSGRAGFQPPVATDESMLLVLRYPKELTLTTRAVVGEMRSTRAMSDAAYFDTV 268
Query: 274 HLLSQLGAYSNYQFGS-EELVGTA--CKPHPYRDDVLAGGGGDRGLYKGTSFCGILDRFT 330
L+S Y+F EEL A C+P DD GG R LYKG C +L+R+
Sbjct: 269 KLVSGPTWNRQYEFRRPEELAAAAGTCRPLTSSDD---GGNRARDLYKGRHLCDVLERYI 325
Query: 331 SEDVLAVVPNWR-CNTT-DDALCRRLGPFETDKAVDATDGGFAGVRIVMQEVRC---EPR 385
V+ P WR CN+T A C PFE D+A DA A V IV+ ++RC +
Sbjct: 326 -HGVITARPTWRHCNSTATGAPC----PFEMDRAEDA-----AIVGIVLHDLRCLGYDLD 375
Query: 386 TDGGEISARVSAVFRAVPPWEHAYTAAKRSGLGGATMSAEGVWRASSGQLCMVACLGVGA 445
G +VS VFRA+ P EH YTA +R+ L GAT+SAEGVW AS+G++ MVAC G+G
Sbjct: 376 MAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNASAGEVSMVACRGIGG 435
Query: 446 KACHSRVCLYLQTTFSATRRSITVGQITSI-----GGGAAHFPPLTFQRTVHPMELWSRF 500
KACH RVCL TFS T R + +G+IT++ GGGA L+F++ + P L +
Sbjct: 436 KACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARS--SLSFRQRMPPPRL--QR 491
Query: 501 GVTGGEPLSLAYSYTKTKQAGEFLRR-SEPFDFGTVIAKSL-LSYPRKSGDAADETTSLS 558
V+G P+ Y+YTK K AGEFLRR S P D +IA+SL LSYP G+ D SL+
Sbjct: 492 CVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCGGNG-DGKRSLA 550
Query: 559 NLAEELTLHVAAVPDPF-PRGRFERPFLQLEVLSLGSLVGRASPATFPGTPAAVGQSMAX 617
+LA+ LTL A+P F P G ERP L LEV LG L+ R PA+ T + +
Sbjct: 551 DLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT------TRSS 604
Query: 618 XXXXXXXKLDATAILNVSAELTISGDAYVNVSTLSLEGVYNPVDGRMYLIGCRRIQ-APW 676
L +LNVSAELTI GD V S +SLEGVY+ DGRMYLIGCR + PW
Sbjct: 605 AIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVHHLPW 664
Query: 677 RAFSAMGGVE--EGMDCSIEVRVEYPPTTARWLINPTAKVHIASTRGGGDDPLRFNATAL 734
R+ SA +E EGMDCSIEV+VEYPP T W + TA+V IASTR GDDPL F+ L
Sbjct: 665 RSSSARRELELEEGMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFDTVKL 724
Query: 735 QTLPILYREQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSHTDVMPYVSVVMLGV 794
+ P+ Y + D +SR V+ +L VV L A IAA QL ++K H DV PYVS+VMLGV
Sbjct: 725 RAQPVRYPRRWPDFVSRAIVDSVLCVVLLTATIAAALCQLHHLKHHADVAPYVSLVMLGV 784
Query: 795 QAVGYSVPLITGAEALFARIAASS--GDGGATPPP--SYEVDKSQLYWTIDCVVKXXXXX 850
QA+G +PL G EAL AR+ PPP SY +D + Y +D K
Sbjct: 785 QALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKILAVA 844
Query: 851 XXXXXXXXVQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAVVLAAHYVSVL 910
KV RSR RLL RSP E RVPSD KV VY S AHL F VVLA +
Sbjct: 845 EFLLTLCIAWKVRRSRARLLARSPGEAARVPSDGKVFVYCSSAHLALFVVVLALN----- 899
Query: 911 ARPVRSEASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWRINCRPLKTGY 970
S DA T+E+++GL QDMFLLPQVIGN W +NC+PL +
Sbjct: 900 --------SSRDA------------TVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSF 939
Query: 971 YAGLTAVRLLPHVYDYVRAPAINPYFAEEYEFVNTSL-----DFYSRSGDVAIPXXXXXX 1025
Y G+TA RLLP VYD VR + F+++ T+ F+ R+GDV +P
Sbjct: 940 YVGITAARLLPRVYDLVRPTPVADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSL 999
Query: 1026 XXXXYVQQRWNYKIISKT-VKTQQKKLQHL 1054
+VQQRWNY I+S+ +QQ+KL H+
Sbjct: 1000 AGAVFVQQRWNYAIVSRMGNSSQQQKLHHI 1029
>Os02g0688001
Length = 112
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 3/93 (3%)
Query: 525 RRSEP---FDFGTVIAKSLLSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFE 581
RR P F++GTVIA SLLSYPRKSGDA +E TSLSNL EELTL+V VP+PFPRGRF
Sbjct: 19 RRVPPAKRFNYGTVIANSLLSYPRKSGDAVNEMTSLSNLTEELTLYVPTVPEPFPRGRFG 78
Query: 582 RPFLQLEVLSLGSLVGRASPATFPGTPAAVGQS 614
PFLQL++ SLGS+VGRASPA+F GTP A G+S
Sbjct: 79 WPFLQLKIFSLGSIVGRASPASFLGTPVAEGRS 111
>Os05g0557500 Conserved hypothetical protein
Length = 421
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 179/430 (41%), Gaps = 48/430 (11%)
Query: 631 ILNVSAELTISGDAYVNV---STLSLEGVYNPVDGRMYLIGCRRIQAPWRAFSAMGGVEE 687
+LNVS ++ G+ + +S EGVY+ G + +I CR +
Sbjct: 25 LLNVSYDIHYVGNWSLETFRRQHISAEGVYDAKTGSLCMIACRVVNI------------- 71
Query: 688 GMDCSIEVRVEYPPTTARWLINPTAKVHIASTRGGGDDPLRFNATALQTLPILYREQRQD 747
+DC I V ++ P + + K I S R D PL F + + LY ++ +
Sbjct: 72 SLDCEILVTAQFSPLDTK--VAQHVKGTIRSLRKKTD-PLFFEPLDIASYG-LYIDKVDE 127
Query: 748 ILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSHTDVMPYVSVVMLGVQAVGYSVPLITGA 807
+ R +E + ++++ + QL ++K + +P +S+ ML V ++GY +PL+
Sbjct: 128 SMWRMDLESTMALISMTLSCLFIAVQLFHVKKVPEALPAMSITMLVVLSLGYMIPLVLNF 187
Query: 808 EALFARIAASSGDGGATPPPS----YEVDKSQLYWTIDCVVKXXXXXXXXXXXXXVQKVW 863
EALF T P S EV+ + +V+ +Q
Sbjct: 188 EALF------KNSNKQTFPLSGGGWLEVN--------EVIVRIITMVTFLMQLRLLQLAC 233
Query: 864 RSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAVVLAAHYVSVLARPVRSEASYMDA 923
+R +++ ++KKVL +++G H R + + + +
Sbjct: 234 SARSMDVSKDQ----SWAAEKKVLWICLPLYIIGAVAAWVVHMQFNNNRRMLRKVARL-P 288
Query: 924 RGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWRINCRPLKTGYYAGLTAVRLLPHV 983
R HA E L Y GL D FLLPQVI N + L G+Y G T +R LPHV
Sbjct: 289 RVNRHAFWE---DLVSYGGLILDGFLLPQVILNACLGSKVKALSPGFYIGSTMIRALPHV 345
Query: 984 YDYVRAPAINPYFAEEYEFVNTSLDFYSRSGDVAIPXXXXXXXXXXYVQQRWN--YKIIS 1041
YD RA P Y + N D +S + D+AIP ++QQR+ + I S
Sbjct: 346 YDVFRAKHFVPSLRPFYRYANPRDDLFSLAWDIAIPCGAILLSVLLFLQQRFGGAFFICS 405
Query: 1042 KTVKTQQKKL 1051
K K + ++
Sbjct: 406 KNRKASEYEM 415
>Os01g0678100 Conserved hypothetical protein
Length = 967
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 172/707 (24%), Positives = 278/707 (39%), Gaps = 141/707 (19%)
Query: 372 GVRIVMQEVRCEPRTDGGEISARV--SAVFRAVPPWEHAYTAAKRSGLGGATMSAEGVWR 429
G+R+++ ++ C T G + A V S + W R + + A+G W
Sbjct: 286 GLRMLVNQMHC---TANGSVRAYVVFSNYTDSERRWRRDMVINNRFLVKEEAVVADGYWD 342
Query: 430 ASSGQLCMVACLGVGAKACHSRVCLYLQTTFSATRRSITVGQITSIGGGAAHFPPLTF-- 487
+++ +LC+ AC + HS SA + VG+ G G + + P +
Sbjct: 343 STTSRLCLRAC-----RVAHS----------SAAETELKVGE--QCGLGMSFWFPAVWTI 385
Query: 488 -QRTVHPMELW------SRFGVTGGEPLSLAYSYTKTKQAGEFLRRSEPFDFG---TVIA 537
R++ LW S G LS S + G RRS D T++
Sbjct: 386 RDRSIVAGLLWNANQEESGGNKHAGASLSGVMSVSSIDGDGYNRRRSNLTDVKYNYTMVE 445
Query: 538 KSLLSY------PRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFERPFLQLEVLS 591
K+ Y RK+G ++ S + RF+ +E L
Sbjct: 446 KAKKQYLSCKFSKRKTGRFPGNSSMYS----------------YSDFRFD----FIETLG 485
Query: 592 LGSLVGRASPATFPGTPAAVGQSMAX-------------XXXXXXXKLDATAILNVSAEL 638
G G+ASP T G+ G +A ++D + +LNVS ++
Sbjct: 486 AG---GQASPVTI-GSVMVDGDQLAAEYMFFRHAMGEMNKSRTTVVRMDHSQLLNVSYDI 541
Query: 639 TI-----SGDAYVNVSTL------------SLEGVYNPVDGRMYLIGCRRIQAPWRAFSA 681
+ + A N S+L S EGVY+P G ++++GC+ I
Sbjct: 542 SYRVRSANSKARKNSSSLFSHPLSIERREISAEGVYDPKTGILFMVGCQEING------- 594
Query: 682 MGGVEEGMDCSIEVRVEYPPTTARWLINPTAKVHIASTRGGGDDPLRFNATALQTLPILY 741
DC I V V + A+ N + I+STR D L F A + TL +Y
Sbjct: 595 -----SSTDCQILVTVHFASLDAKG--NGHGRGKISSTRDKADR-LHFEAMDI-TLYGMY 645
Query: 742 REQRQDILSRRSVEGILRVVTLAAAIAAEFSQLMYIKSHTDVMPY-VSVVMLGVQAVGYS 800
REQ + + R +E I+ VV+ + Q+ + +++ P SV ML V A+G+
Sbjct: 646 REQIGESIWRMDLEIIMAVVSATLSCVFAALQIRHARANPASAPSATSVAMLAVLALGHV 705
Query: 801 VPLITGAEALF----ARIAASSGDGGATPPPSYEVDKSQLYWTIDCVVKXXXXXXXXXXX 856
L +ALF S DG E+++ L +
Sbjct: 706 THLALNVDALFVSRRTHYIPISADGW------LELNEVML--------RVPTLIAFALHL 751
Query: 857 XXVQKVWRSRIRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAVVLAAHYVSVLARPVRS 916
+Q VW SR R R+ E ++++ L +L+G + A H ++ R
Sbjct: 752 CLLQLVWSSR-RSAPRAIAEKWSA-AERRSLWICLPLYLLGGLLAGAVHVINN-GRAAAE 808
Query: 917 EASYMDARGEAHALREWAVTLEEYIGLAQDMFLLPQVIGNVVWRINCRPLKTGYYAGLTA 976
+ + G++ L + L Y GL D FLLPQVI N + R R + +Y G+T
Sbjct: 809 NSLVVRVAGDSGTLWD---DLASYAGLVLDGFLLPQVILNALSRSRARAISAWFYVGVTV 865
Query: 977 VRLLPHVYDYVRA----PAINPYFAEEYEFVNTSLDFYSRSGDVAIP 1019
+R PHVYD +RA P++ P + Y + + D + + DVA+P
Sbjct: 866 LRAAPHVYDALRARGYVPSVRP--SSTYVYASPRDDLFGVAWDVAVP 910
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,368,953
Number of extensions: 1688279
Number of successful extensions: 3900
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3883
Number of HSP's successfully gapped: 5
Length of query: 1093
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 982
Effective length of database: 11,240,047
Effective search space: 11037726154
Effective search space used: 11037726154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)