BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0176800 Os01g0176800|J100055F19
(1093 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52780.1 | chr1:19658846-19662025 FORWARD LENGTH=1060 786 0.0
AT4G21700.1 | chr4:11529956-11532844 FORWARD LENGTH=963 69 2e-11
>AT1G52780.1 | chr1:19658846-19662025 FORWARD LENGTH=1060
Length = 1059
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/1042 (42%), Positives = 607/1042 (58%), Gaps = 56/1042 (5%)
Query: 47 YVRFADVKRQCKSVLSSAAELTF-DANRA-NGLMPELSFVKGDWKHXXXXXXXXXAPLLP 104
Y R DVK++CKSVLSSA+EL D +R L F GDW +P+LP
Sbjct: 52 YDRINDVKKKCKSVLSSASELKLEDISRTPRKSKRNLGFRYGDWNQDSGD-----SPILP 106
Query: 105 FDGTDVXXXXXXXXXXXXXXXXSFSLTHVDAARRGRTALNVSGVLGVAISRNGTGPEMGP 164
FD T+ SFS+T +D R + + V+GVL +AI+ P +
Sbjct: 107 FDSTNTLRNSSTKPMNLV----SFSVTDLDLPHRTKKYIGVNGVLLLAITMFSELPSLRS 162
Query: 165 YVSPEFKVWPGNTELKVLLEGVYTENDDGESVLCMVGDAVLPARG-GDAANPWGWAKHSD 223
Y EF++WP +T+LK+ +G+Y ENDD E VLCM+G+ +LP+R D++NPW W K D
Sbjct: 163 YGLREFELWPSHTQLKISFQGIYVENDDDERVLCMLGETMLPSRDESDSSNPWKWVKEHD 222
Query: 224 RDRFQPPITKDGNILLVLRYPKTLTLTTRAVHGELTSTNGKTHAAYFDAVHLLSQLGAYS 283
PP+ +D ILL+LRYPK+ TLT R + GELTS N K FD +HL SQLG
Sbjct: 223 ----TPPLLQDDMILLLLRYPKSFTLTKRVIQGELTSLNQKPSLKLFDKIHLFSQLGKSV 278
Query: 284 NYQFGSEELVGTACKPHPYRDDVL-AGGGGDRGLYKGTSFCGILDRFTSEDVLAVVPNWR 342
Y F S +LV AC P+PY++D + G G +YK FC +L R T+ L VVPNW+
Sbjct: 279 RYDFVSNDLVSKACDPYPYKNDTFTSSGSGGINVYKEKGFCDLLQRVTNRAPLTVVPNWK 338
Query: 343 CNTTDDALCRRLGPFETDKAVDATDGGFAGVRIVMQEVRCEPRTDGGEISA--RVSAVFR 400
C+ TD+ C +LGPF DK + +TDG F V++ MQ V CE + A +VSAVFR
Sbjct: 339 CHGTDE-YCSKLGPFAFDKDIKSTDGSFKDVKLYMQNVHCEETAARSQSDAVTKVSAVFR 397
Query: 401 AVPPWEHAYTAAKRSGLGGATMSAEGVWRASSGQLCMVACLGVGAKACHSRVCLYLQTTF 460
AV P E+ Y + RSG+ T++AEG+W+ SSGQLCMV C C++R+CLY+ TTF
Sbjct: 398 AVHPNENLYISGMRSGIDNMTVTAEGIWKPSSGQLCMVGCRRGQVDGCNARICLYIPTTF 457
Query: 461 SATRRSITVGQITSIG---GGAAHFPPLTFQRTVHPMELWSRFGVTGGEPLSLAYSYTKT 517
S +RSI VG + + F PL+F++ V PM++ + F + P YSY+K
Sbjct: 458 SIRQRSILVGTFSCLNTEKNLTPSFFPLSFEKLVEPMDMQNYFHSSASHPF---YSYSKL 514
Query: 518 KQAGEFLRRSEPFDFGTVIAKSLLSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPR 577
AG L R+E F FGT+I KS++ +P K D+ D +SLS LAE+LT H A F
Sbjct: 515 DDAGAILERNEEFSFGTIIKKSVMHFP-KLEDSDDLLSSLSLLAEDLTFHTPA----FTE 569
Query: 578 GRFERPFLQLEVLSLGSLVGRASPATFPGTPAAVGQSMAXXXXXXXXKLDATAILNVSAE 637
R ++VLSLG L G F T + +LNVS +
Sbjct: 570 KRASGTNFGMDVLSLGPLFG-----LFWRTSNFSIADQTTPYRTKAEYTEKQLLLNVSGQ 624
Query: 638 LTISGDAYVNVSTLSLEGVYNPVDGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCSIEVRV 697
++++G+ + N S L LEG+Y+ G+MYL+GCR ++A W+ +E G+DC I+V V
Sbjct: 625 ISLTGENFGNFSVLYLEGLYDEHVGKMYLVGCRDVRASWKILFESPDLEAGLDCLIDVVV 684
Query: 698 EYPPTTARWLINPTAKVHIASTRGGGDDPLRFNATALQTLPILYREQRQDILSRRSVEGI 757
YPP +RWL +PTAKV I+S R DDPL F L+T PI YR QR+DILSR VEGI
Sbjct: 685 SYPPIKSRWLADPTAKVSISSNRPE-DDPLYFKPIKLKTTPIFYRRQREDILSRAGVEGI 743
Query: 758 LRVVTLAAAIAAEFSQLMYIKSHTDVMPYVSVVMLGVQAVGYSVPLITGAEALFARIAAS 817
LRV+TL +I S L Y+ S+TD +P+VS+VMLGVQA+GYS+PLITGAEALF R AAS
Sbjct: 744 LRVLTLTFSIGCITSLLFYVSSNTDSLPFVSLVMLGVQALGYSLPLITGAEALFKRKAAS 803
Query: 818 SGDGGATPPPSYEVDKSQLYWTIDCVVKXXXXXXXXXXXXXVQKVWRSRIRLLTRSPLEP 877
+ PSY++ +SQ + ID VK QKVW+SR RLLTR+P EP
Sbjct: 804 A---TTYETPSYDLQRSQWFNVIDYTVKLLVMVCFLLTLRLCQKVWKSRARLLTRTPQEP 860
Query: 878 GRVPSDKKVLVYTSGAHLVGFAVVLAAHYVSVLARPVRSEASYMDARGEAHALREWAVTL 937
+VPSD++VL+ H +G+ V L H P R++ + G ++A W
Sbjct: 861 HKVPSDRRVLLVVLILHALGYIVALIRH-------PARADRLVGGSYG-SNASNWWQTET 912
Query: 938 EEYIGLAQDMFLLPQVIGNVVWRINCR-PLKTGYYAGLTAVRLLPHVYDYVRAPAINPYF 996
EEYIGL QD FLLPQVI N +W+I+ R PL+ YY G+T VRL PH YDY+ +PYF
Sbjct: 913 EEYIGLVQDFFLLPQVIANAMWQIDSRQPLRKLYYFGITLVRLFPHAYDYIVGSVPDPYF 972
Query: 997 -AEEYEFVNTSLDFYSRSGDVAIPXXXXXXXXXXYVQQRWNYKIISKTVKTQQKKLQHLG 1055
EE+EFVN + DF+S+ GD+AIP +VQQRW+Y +S+ + + ++
Sbjct: 973 IGEEHEFVNPNFDFFSKFGDIAIPVTAILLAVIVFVQQRWDYDKLSQALSFGRFRILPSR 1032
Query: 1056 SRVYERLPSMSSANFEAELVAG 1077
S YER+ S E+E+V+G
Sbjct: 1033 SVKYERVMS------ESEMVSG 1048
>AT4G21700.1 | chr4:11529956-11532844 FORWARD LENGTH=963
Length = 962
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 156/406 (38%), Gaps = 64/406 (15%)
Query: 420 ATMSAEGVWRASSGQLCMVACLGVG---------AKACHSRVCLYLQTTFSATRRSITVG 470
++ AEG W + C VAC + C R+ L S + VG
Sbjct: 353 TSLVAEGSWDVERNRFCGVACRILNFSDSLSNAVVDDCSLRLSLRFPAILSIKSMAPVVG 412
Query: 471 QITSIGGGAAHFPPLTFQRTVHPM---ELWSRFGVTGGEPLSLAYSYTKTKQAGEFLR-- 525
++ S A P F+R +LW RF SL Y YT++++ G+
Sbjct: 413 ELWS---AQAESDPSYFRRIEFSSLNDQLW-RFP-------SLRYEYTESERVGKLCGAG 461
Query: 526 RSEPFDFGTVIAKSLLSYPRKSGDAADETTSLSNLAEELTLHVAAVPDPFPRGRFERPFL 585
+S P G YP S+ E L A F R R
Sbjct: 462 KSRPKRKGN-------HYPDAQTSDMRFVMSVKYSGEGNVLRTARASPYFVGDRLYR--- 511
Query: 586 QLEVLSLGSLVGRASPATFPGTPAAVGQSMAXXXXXXXXKLDATAILNVSAELTISGDAY 645
L+ R G P V S+ ++ + LN ++E GD Y
Sbjct: 512 --------DLLVRGQGVGLTGIPMNV-NSVTKSFTNITYRIRS---LNPNSE--SRGDIY 557
Query: 646 VNVSTLSLEGVYNPVDGRMYLIGCRRIQAPWRAFSAMGGVEEGMDCSIEVRVEYPPTTAR 705
EG Y+ G + ++GC+ + R + + E +DCS+ +++ + P +R
Sbjct: 558 A-------EGTYDRDTGELCMVGCQSV----RLKNTVAIQNETVDCSLAIKINFSPIDSR 606
Query: 706 WLINPTAKVHIASTRGGGDDPLRFNATALQTLPILYREQRQDILSRRSVEGILRVVTLAA 765
+ K I STR DPL + + I Y Q ++ + R +E + +V+
Sbjct: 607 --SDDRLKGTIKSTREK-TDPLYVGRMEVLSRSI-YVHQAKESVWRMDLEVAMVLVSNTL 662
Query: 766 AIAAEFSQLMYIKSHTDVMPYVSVVMLGVQAVGYSVPLITGAEALF 811
+ QL ++K H + +P++SV ML + +G+ +PL+ E LF
Sbjct: 663 SCLFLGMQLYHMKQHQEALPFISVAMLILITLGHMIPLLLNFEELF 708
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 937 LEEYIGLAQDMFLLPQVIGNVVWRINCRPLKTGYYAGLTAVRLLPHVYDYVRAPAINPYF 996
L+ Y GL D FLLPQ++ N + +PL +Y G + VRLLPH YD R+ +
Sbjct: 830 LKSYGGLMLDAFLLPQILFNGFSNSDLKPLAALFYVGNSFVRLLPHAYDLYRSHSYGKIL 889
Query: 997 AEEYEFVNTSLDFYSRSGDVAIPXXXXXXXXXXYVQQRW-----------NYKIISKTVK 1045
+ + N +D+YS + D+ I ++QQR+ Y K V+
Sbjct: 890 DWSFIYANHKMDYYSTAWDIIILCIGFLFAFLIFLQQRFGGRCFIPKRFREYVGYEKVVE 949
Query: 1046 TQQKKLQH 1053
QQ QH
Sbjct: 950 LQQAGEQH 957
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,720,388
Number of extensions: 946970
Number of successful extensions: 1777
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1760
Number of HSP's successfully gapped: 3
Length of query: 1093
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 984
Effective length of database: 8,118,225
Effective search space: 7988333400
Effective search space used: 7988333400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)