BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0580500 Os07g0580500|AK106748
(304 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0580500 BZR1, transcriptional repressor family protein 490 e-139
Os06g0552300 BZR1, transcriptional repressor family protein 132 3e-31
Os01g0203000 BZR1, transcriptional repressor family protein 112 5e-25
Os02g0233200 BZR1, transcriptional repressor family protein 104 9e-23
>Os07g0580500 BZR1, transcriptional repressor family protein
Length = 304
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/304 (82%), Positives = 251/304 (82%)
Query: 1 GTELVGMTSGAAAAGRTPTWXXXXXXXXXXXXXXXXXXXXFTGLRALGNYNLPKHCDNNE 60
GTELVGMTSGAAAAGRTPTW FTGLRALGNYNLPKHCDNNE
Sbjct: 1 GTELVGMTSGAAAAGRTPTWKERENNKRRERRRRAIAAKIFTGLRALGNYNLPKHCDNNE 60
Query: 61 VLKALCREAGWVVEDDGTTYRKGCKPPPSSAGGASVGMSPCXXXXXXXXXXXXXXXXXXX 120
VLKALCREAGWVVEDDGTTYRKGCKPPPSSAGGASVGMSPC
Sbjct: 61 VLKALCREAGWVVEDDGTTYRKGCKPPPSSAGGASVGMSPCSSTQLLSAPSSSFPSPVPS 120
Query: 121 XXXXXXXXXXXXXXRIDNPSASCLLPFLRGLPNLPPLRVSSSAPVTPPLSSPTASRPPKI 180
RIDNPSASCLLPFLRGLPNLPPLRVSSSAPVTPPLSSPTASRPPKI
Sbjct: 121 YHASPASSSFPSPSRIDNPSASCLLPFLRGLPNLPPLRVSSSAPVTPPLSSPTASRPPKI 180
Query: 181 RKPDWDVDPFRHPFFAVSAPASPTRGRRLEHPDTIPECDESDVSTVDSGRWISFQMATTA 240
RKPDWDVDPFRHPFFAVSAPASPTRGRRLEHPDTIPECDESDVSTVDSGRWISFQMATTA
Sbjct: 181 RKPDWDVDPFRHPFFAVSAPASPTRGRRLEHPDTIPECDESDVSTVDSGRWISFQMATTA 240
Query: 241 PTSPTYNLVNPGASTSNSMEIEGTAGRGGAEFEFDKGRVTPWEGERIHEVAAEELELTLG 300
PTSPTYNLVNPGASTSNSMEIEGTAGRGGAEFEFDKGRVTPWEGERIHEVAAEELELTLG
Sbjct: 241 PTSPTYNLVNPGASTSNSMEIEGTAGRGGAEFEFDKGRVTPWEGERIHEVAAEELELTLG 300
Query: 301 VGAK 304
VGAK
Sbjct: 301 VGAK 304
>Os06g0552300 BZR1, transcriptional repressor family protein
Length = 355
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 150/349 (42%), Gaps = 84/349 (24%)
Query: 16 RTPTWXXXXXXXXXXXXXXXXXXXXFTGLRALGNYNLPKHCDNNEVLKALCREAGWVVED 75
R PTW + GLRA GNYNLPKHCDNNEVLKALC EAGW VE
Sbjct: 18 RVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEP 77
Query: 76 DGTTYRKGCKPPPSSAG---GASVGMSPCXXXXXX--XXXXXXXXXXXXXXXXXXXXXXX 130
DGTTYRKGCKPP + G S SPC
Sbjct: 78 DGTTYRKGCKPPQAERPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSSSHITI 137
Query: 131 XXXXRIDNPSASCLLPFLRGLP---------NLPPLRV------SSSAPVTPPLSSPTAS 175
I S L+P+L+ LP P L S SAPVTPP SSPT
Sbjct: 138 GGNSLIGGVEGSSLIPWLKTLPLSSSYASSSKFPQLHHLYFNGGSISAPVTPPSSSPT-- 195
Query: 176 RPPKIRKPDWDVDPFRHPFFA---VSAPAS--PTRGRRLEHPDTIPECDESDVSTVDSGR 230
R P++R DW+ + P+ + S P S P+ G ++ PD
Sbjct: 196 RTPRLRT-DWENASVQPPWASANYTSLPNSTPPSPGHKIA-PDPA--------------- 238
Query: 231 WIS-FQMATTAPTSPTYNLVNPG---------ASTSNSMEIEGTAG-----RGGA----- 270
W+S FQ+++ P+SPTYNLV+P ASTS + G +G GG
Sbjct: 239 WLSGFQISSAGPSSPTYNLVSPNPFGIFKEAIASTSR-VCTPGQSGTCSPVMGGMPAHHD 297
Query: 271 ---------EFEFDK---------GRVTPWEGERIH-EVAAEELELTLG 300
+F F G V WEGERIH E A++ELELTLG
Sbjct: 298 VQMVDGAPDDFAFGSSSNGNNESPGLVKAWEGERIHEECASDELELTLG 346
>Os01g0203000 BZR1, transcriptional repressor family protein
Length = 365
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 134/331 (40%), Gaps = 50/331 (15%)
Query: 16 RTPTWXXXXXXXXXXXXXXXXXXXXFTGLRALGNYNLPKHCDNNEVLKALCREAGWVVED 75
R PTW F GLRA G Y LPKHCDNNEVLKALC EAGWVVE
Sbjct: 31 RMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
Query: 76 DGTTYRKGCKPPP--SSAGGASVGMSPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 133
DGTTYRKG KPP G +
Sbjct: 91 DGTTYRKGYKPPERMEVIGCSVSPSPCSSYQPSPRASYNASPTSSSFPSGASSPFLPHPN 150
Query: 134 XRIDNPSASCLLPFLRGL---------PNLPPLRV---SSSAPVTPPLSSPTASRPPKIR 181
+ + +LP+L+ L P LPPL + S SAPVTPPLSSPTA R P++
Sbjct: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTA-RTPRM- 208
Query: 182 KPDWD---VDPF----RHPFFAVSAPASPTRGRRLEHPDTIPECD-------ESDVSTVD 227
K DWD V P P S P SP R L P + S V
Sbjct: 209 KTDWDESNVQPTWTGSNSPCVVNSTPPSPGR-TMLPDPAWLAGIQISSTSPSSPTFSLVS 267
Query: 228 SGRWISFQMATTAPTSPTYNLVNPGASTSNSMEIEGTAGRGGA--------EFEFDK--- 276
S + F+ A + + + PG S + S I G A EF F
Sbjct: 268 SNPFSVFKDAILVGNN-SSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGSSTN 326
Query: 277 ------GRVTPWEGERIHE-VAAEELELTLG 300
G V WEGERIHE +++LELTLG
Sbjct: 327 GGHQAAGLVRAWEGERIHEDSGSDDLELTLG 357
>Os02g0233200 BZR1, transcriptional repressor family protein
Length = 376
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 138/373 (36%), Gaps = 99/373 (26%)
Query: 15 GRTPTWXXXXXXXXXXXXXXXXXXXXFTGLRALGNYNLPKHCDNNEVLKALCREAGWVVE 74
GR PTW + GLRA GNY LPKHCDNNEVLKALC EAGW VE
Sbjct: 8 GRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVE 67
Query: 75 DDGTTYR-------------------------KGCKPPPSSAG---GASVGMSPCXXXXX 106
DGTTYR KGCKPP S G S SPC
Sbjct: 68 PDGTTYRKYWSLDRIEAAHVKKGLVKEAIMETKGCKPPASELADQLGRSPSASPCSSYQP 127
Query: 107 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRIDNPSASCLLPFLRGLPNLPPLRV------- 159
S L+P+L+ L +
Sbjct: 128 SPRGTSSFPSSGSSSQITLGGG--------GGGEGSSLIPWLKTLSSAGVGIGGGSSSKF 179
Query: 160 ----------SSSAPVTPPLSSPTASRPPKIRKPDWDVDPFRH------PFFAVSAPASP 203
S SAPVTPP SP R P+++ W+ H P+ V A +
Sbjct: 180 PAHYSYFGGGSISAPVTPPSGSP--PRTPRLKTAAWEEYHHHHAGSVLPPWATVGASYAY 237
Query: 204 TRGRRLEHPDTIPECDESDV--------STVDSGRWIS-FQMATTAPTSPTYNLV----- 249
L P++ P V D+ W++ FQ+++ P+SPTY+LV
Sbjct: 238 AASSSL--PNSTPPSPRRKVAAAAAAAGGGNDAAAWLAGFQISSAGPSSPTYSLVAPPPN 295
Query: 250 ------NPGASTSNSMEIEGTAGRGG---------AEFEFD------KGRVTPWEGERIH 288
S+S M + GG EF F G V WEGERIH
Sbjct: 296 PFGAAAAAAGSSSRVMSGACSPVAGGDVQMADAARREFAFGGEGGKMTGLVKAWEGERIH 355
Query: 289 -EVAAEELELTLG 300
E +++LELTLG
Sbjct: 356 EECGSDDLELTLG 368
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,422,677
Number of extensions: 513960
Number of successful extensions: 2582
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2577
Number of HSP's successfully gapped: 5
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)