Os02g0233200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BZR1, transcriptional repressor family protein.
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Os02g0233200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BZR1, transcriptional repressor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.95 | 0.502 | 7.58 | 0.518 | 1.11 | 0.762 | -0.805 | -0.666 | 1.09 | 0.115 | 16.03 | 1422 | -- | -- |
| 115.03 | 0.5 | 7.58 | 0.485 | 1.12 | 0.774 | -0.741 | -- | 1.1 | 0.0691 | 15.09 | 1421 | -- | -- |
| 116.67 | 0.503 | 7.58 | 0.539 | 1.11 | 0.771 | -- | -0.565 | 1.09 | 24 | 16.03 | 1425 | -- | -- |
| 117.38 | 0.505 | 7.59 | 0.485 | 1.11 | 0.775 | -- | -- | 1.09 | 0.051 | 16.02 | 1421 | -- | -- |
| 162.47 | 0.597 | 7.62 | 0.33 | -- | 0.708 | -- | -0.87 | 0.827 | -- | 16.03 | 1425 | -- | -- |
| 135.7 | 0.546 | 7.64 | 0.292 | 1.05 | -- | -0.903 | -- | 0.857 | 0.103 | -- | -- | -- | -- |
| 139.14 | 0.552 | 7.64 | 0.329 | 1.05 | -- | -- | -- | 0.862 | 23.9 | -- | -- | -- | -- |
| 140.85 | 0.555 | 7.6 | 0.326 | -- | 0.785 | -- | -- | 0.942 | -- | 3.794 | 1690 | -- | -- |
| 122.34 | 0.515 | 7.6 | -- | 1.13 | 0.775 | -- | -- | 1.07 | 24 | 19.98 | 1441 | -- | -- |
| 209.14 | 0.676 | 7.61 | 0.361 | -- | -- | -- | -- | 0.877 | -- | -- | -- | -- | -- |
| 142 | 0.557 | 7.64 | -- | 1.06 | -- | -- | -- | 0.826 | 24 | -- | -- | -- | -- |
| 143.65 | 0.56 | 7.61 | -- | -- | 0.788 | -- | -- | 0.907 | -- | 3.794 | 1690 | -- | -- |
| 212.59 | 0.681 | 7.62 | -- | -- | -- | -- | -- | 0.836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.49 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 3 | 113.39 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 4 | 113.50 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 28 | 113.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 32 | 113.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 33 | 113.69 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 37 | 113.70 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 56 | 113.74 | radiation | 1 | 1440 | > th | dose dependent | sin | 20 | NA |
| 61 | 113.76 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 76 | 113.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 78 | 113.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 96 | 113.80 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 99 | 113.80 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 116 | 113.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 135 | 113.94 | radiation | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 155 | 113.96 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 189 | 114.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 221 | 114.05 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 295 | 114.15 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 308 | 114.18 | radiation | 20 | 1440 | < th | dose independent | sin | 21 | NA |
| 317 | 114.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 345 | 114.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 362 | 114.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 380 | 114.28 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 382 | 114.28 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 472 | 114.40 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 488 | 114.41 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 493 | 114.42 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 556 | 114.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 583 | 114.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 705 | 114.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 706 | 114.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 730 | 114.54 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 745 | 114.56 | radiation | 30 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 748 | 114.56 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 761 | 114.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 775 | 114.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 800 | 114.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 802 | 114.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 805 | 114.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 808 | 114.60 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 836 | 114.61 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 837 | 114.61 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 895 | 114.63 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 974 | 114.68 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 976 | 114.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 997 | 114.72 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 999 | 114.73 | radiation | 20 | 1440 | > th | dose independent | sin | 0 | NA |