BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0233200 Os02g0233200|Os02g0233200
(376 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78700.1 | chr1:29599854-29601539 FORWARD LENGTH=326 149 3e-36
AT4G18890.1 | chr4:10352774-10355259 FORWARD LENGTH=285 103 1e-22
AT1G19350.3 | chr1:6688680-6690165 FORWARD LENGTH=358 97 2e-20
AT3G50750.1 | chr3:18862147-18863062 REVERSE LENGTH=277 95 6e-20
AT4G36780.1 | chr4:17332989-17334212 REVERSE LENGTH=266 95 6e-20
AT1G75080.1 | chr1:28185709-28187063 FORWARD LENGTH=337 93 2e-19
AT5G45300.1 | chr5:18353636-18356696 FORWARD LENGTH=690 64 9e-11
AT2G45880.1 | chr2:18878674-18881824 REVERSE LENGTH=692 57 2e-08
>AT1G78700.1 | chr1:29599854-29601539 FORWARD LENGTH=326
Length = 325
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 152/385 (39%), Gaps = 81/385 (21%)
Query: 7 GGRVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTV 66
G R+PTW AIAAKI+ GLR YGNY LPKHCDNNEVLKALCNEAGW V
Sbjct: 4 GTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIV 63
Query: 67 EPDGTTYRKYWSLDRIEAAHVKKGLVKEAIMETKGCKPPASELADQLGRSPSASPCSSYQ 126
EPDGTTYR KGC P E + G S +ASPCSSYQ
Sbjct: 64 EPDGTTYR-------------------------KGCSRPV-ERMEIGGGSATASPCSSYQ 97
Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XLIPWLKTLXXXXXXXXXXXXXKFPAH 182
LIPWLK L + P +
Sbjct: 98 PSPCASYNPSPGSSNFMSPASSSFANLTSGDGQSLIPWLKHL-STTSSSSASSSSRLP-N 155
Query: 183 YSYFGGGSISAXXXXXXXXXXXXXXLKTAAWEEYHHHHAGSVLPPWATVGXXXXXXXXXX 242
Y Y GGSISA W++ ++ S PP T
Sbjct: 156 YLYIPGGSISAPVTPPLSSPTARTPRMNTDWQQLNNSFFVSSTPPSPT------------ 203
Query: 243 XXXXXXXXXRRKVXXXXXXXXXXXXXXXXXXXFQISSAGPSSPTYSLVXXXXXXXXXXXX 302
R++ Q++ + P+SPT+SLV
Sbjct: 204 ----------RQI----------IPDSEWFSGIQLAQSVPASPTFSLVSQNPFGFKEEAA 243
Query: 303 XXXXXXXX-------XXXXCSPV------AGGDVQMADA-ARREFAFGGEGGKMTGLVKA 348
CSP DV M++A A EFAF G GLVKA
Sbjct: 244 SAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAF---GSNTNGLVKA 300
Query: 349 WEGERIHEECGSDDLELTLGSSMTR 373
WEGERIHEE GSDDLELTLG+S TR
Sbjct: 301 WEGERIHEESGSDDLELTLGNSSTR 325
>AT4G18890.1 | chr4:10352774-10355259 FORWARD LENGTH=285
Length = 284
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 83/187 (44%), Gaps = 40/187 (21%)
Query: 7 GGRVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTV 66
G R PTW AIAAKI+AGLR +GN+ LPKHCDNNEVLKALCNEAGWTV
Sbjct: 4 GTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTV 63
Query: 67 EPDGTTYRKYWSLDRIEAAHVKKGLVKEAIMETKGCKPPASELADQLGRSPSASPCSSYQ 126
E DGTTYR KGCKP + D + S SASPCSSYQ
Sbjct: 64 EDDGTTYR-------------------------KGCKP--MDRMDLMNGSTSASPCSSYQ 96
Query: 127 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIPWLKTLXXXXXXXXXXXXXKFPAHYSYF 186
LIPWLK L P+ +F
Sbjct: 97 --HSPRASYNPSPSSSSFPSPTNPFGDANSLIPWLKNLSSNS-----------PSKLPFF 143
Query: 187 GGGSISA 193
G SISA
Sbjct: 144 HGNSISA 150
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 275 FQISSAGPSSPTYSLVXXXXXXXXXXXXXXXXXXXX----XXXXCSPV------AGGDVQ 324
Q +GPSSPT+SLV CSP DV
Sbjct: 176 MQTPQSGPSSPTFSLVSRNPFFDKEAFKMGDCNSPMWTPGQSGNCSPAIPAGVDQNSDVP 235
Query: 325 MADAARREFAFGGEGGKMTGLVKAWEGERIHEECGSDDLELTLGSSMTR 373
MAD EFAFG G+VK WEGERIH EC SDDLELTLG+S TR
Sbjct: 236 MADGMTAEFAFGCNAMAANGMVKPWEGERIHGECVSDDLELTLGNSRTR 284
>AT1G19350.3 | chr1:6688680-6690165 FORWARD LENGTH=358
Length = 357
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 47/67 (70%)
Query: 9 RVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEP 68
R P+W A+AAKIY GLRA GNY LPKHCDNNEVLKALC+EAGW VE
Sbjct: 44 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEE 103
Query: 69 DGTTYRK 75
DGTTYRK
Sbjct: 104 DGTTYRK 110
>AT3G50750.1 | chr3:18862147-18863062 REVERSE LENGTH=277
Length = 276
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 1 MMNGGGG-----GRVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVL 55
M GGG GR+PTW AIAAKI+ GLR+ GNY LPKHCDNNEVL
Sbjct: 1 MTASGGGSTAATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVL 60
Query: 56 KALCNEAGWTVEPDGTTYRK 75
KALC EAGW V DGTTYRK
Sbjct: 61 KALCLEAGWIVHEDGTTYRK 80
>AT4G36780.1 | chr4:17332989-17334212 REVERSE LENGTH=266
Length = 265
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 46/67 (68%)
Query: 9 RVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEP 68
R PTW AI AKIY+GLRA GNY LPKHCDNNEVLKALC EAGW VE
Sbjct: 16 RTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVED 75
Query: 69 DGTTYRK 75
DGTTYRK
Sbjct: 76 DGTTYRK 82
>AT1G75080.1 | chr1:28185709-28187063 FORWARD LENGTH=337
Length = 336
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 46/67 (68%)
Query: 9 RVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEP 68
R P+W A+AAKIY GLRA G+Y LPKHCDNNEVLKALC EAGW VE
Sbjct: 23 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDNNEVLKALCVEAGWVVEE 82
Query: 69 DGTTYRK 75
DGTTYRK
Sbjct: 83 DGTTYRK 89
>AT5G45300.1 | chr5:18353636-18356696 FORWARD LENGTH=690
Length = 689
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 28 AIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEPDGTTYRK 75
AI +++ AGLR YGN+ LP D N+V+ AL EAGW+VE DGTTYR+
Sbjct: 105 AITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVEADGTTYRQ 152
>AT2G45880.1 | chr2:18878674-18881824 REVERSE LENGTH=692
Length = 691
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%)
Query: 4 GGGGGRVPTWXXXXXXXXXXXXXXAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAG 63
GGG R AI A+I GLR +GNY L D N+V+ AL EAG
Sbjct: 64 GGGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAG 123
Query: 64 WTVEPDGTTY 73
W V PDGTT+
Sbjct: 124 WVVLPDGTTF 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,724,336
Number of extensions: 178122
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 10
Length of query: 376
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 276
Effective length of database: 8,364,969
Effective search space: 2308731444
Effective search space used: 2308731444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)