Os07g0580500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BZR1, transcriptional repressor family protein.
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Os07g0580500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BZR1, transcriptional repressor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.25 | 0.287 | 10.5 | 0.327 | 1.4 | 0.966 | 0.397 | 0.351 | 0.254 | 6.42 | 30.54 | 80 | -- | -- |
| 37.34 | 0.285 | 10.5 | 0.36 | 1.42 | 0.992 | 0.378 | -- | 0.255 | 6.39 | 31.55 | 70 | -- | -- |
| 37.56 | 0.285 | 10.5 | 0.315 | 1.41 | 0.982 | -- | 0.437 | 0.245 | 6.4 | 31.07 | 71 | -- | -- |
| 37.75 | 0.286 | 10.5 | 0.385 | 1.42 | 0.995 | -- | -- | 0.256 | 6.39 | 31.65 | 67 | -- | -- |
| 109.95 | 0.488 | 10.5 | 0.492 | -- | 2.21 | -- | 1.1 | 0.384 | -- | 41.53 | 310 | -- | -- |
| 49.25 | 0.329 | 10.6 | 0.153 | 1.62 | -- | 0.483 | -- | 0.091 | 5.81 | -- | -- | -- | -- |
| 49.81 | 0.331 | 10.6 | 0.156 | 1.62 | -- | -- | -- | 0.089 | 5.79 | -- | -- | -- | -- |
| 110.81 | 0.49 | 10.5 | 0.665 | -- | 2.24 | -- | -- | 0.431 | -- | 55.16 | 307 | -- | -- |
| 41.22 | 0.299 | 10.5 | -- | 1.45 | 0.865 | -- | -- | 0.185 | 6.28 | 32.73 | 59 | -- | -- |
| 185.63 | 0.637 | 10.6 | 0.206 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 50.46 | 0.332 | 10.6 | -- | 1.62 | -- | -- | -- | 0.0716 | 5.79 | -- | -- | -- | -- |
| 121.65 | 0.514 | 10.5 | -- | -- | 2.01 | -- | -- | 0.331 | -- | 81.51 | 294 | -- | -- |
| 186.76 | 0.638 | 10.6 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 8 | 34.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 18 | 35.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 23 | 35.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 43 | 35.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 45 | 36.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 109 | 37.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 118 | 37.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 123 | 37.19 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 127 | 37.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 130 | 37.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 135 | 37.32 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 155 | 37.50 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 157 | 37.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 163 | 37.53 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 185 | 37.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 196 | 37.73 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 204 | 37.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 215 | 37.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 218 | 37.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 231 | 37.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 262 | 37.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 264 | 38.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 272 | 38.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 277 | 38.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 326 | 38.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 344 | 38.33 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 389 | 38.55 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 21 |
| 390 | 38.55 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 415 | 38.65 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 23 |
| 440 | 38.74 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 22 |
| 458 | 38.82 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 466 | 38.84 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 481 | 38.88 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 485 | 38.89 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 513 | 38.97 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 523 | 38.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 524 | 39.00 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 526 | 39.01 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 18 |
| 532 | 39.02 | radiation | 10 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 533 | 39.03 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 551 | 39.08 | radiation | 10 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 587 | 39.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 628 | 39.28 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 706 | 39.45 | temperature | 25 | 10 | < th | dose independent | rect. | 5 | 18 |
| 724 | 39.49 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 726 | 39.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 741 | 39.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 787 | 39.63 | humidity | 60 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 817 | 39.70 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 17 |
| 835 | 39.72 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 856 | 39.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 875 | 39.78 | radiation | 10 | 720 | < th | dose dependent | sin | 13 | NA |
| 876 | 39.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 887 | 39.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 13 |
| 912 | 39.86 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 932 | 39.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 3 |