BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0573700 Os07g0573700|AK070473
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0573700 Nucleotide-sugar transporter family protein 643 0.0
Os06g0523400 Nucleotide-sugar transporter family protein 201 5e-52
Os02g0604300 Nucleotide-sugar transporter family protein 132 4e-31
Os01g0898900 Nucleotide-sugar transporter family protein 124 8e-29
Os04g0490600 Nucleotide-sugar transporter family protein 89 7e-18
>Os07g0573700 Nucleotide-sugar transporter family protein
Length = 356
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/356 (89%), Positives = 318/356 (89%)
Query: 1 MEYRRVKDQESYDVVSQKDIESPGERXXXXXXXXXXXXXXXXXXXXNSWKLKXXXXXXXX 60
MEYRRVKDQESYDVVSQKDIESPGER NSWKLK
Sbjct: 1 MEYRRVKDQESYDVVSQKDIESPGERSLSSTSATSSLSTAGASKGKNSWKLKSIVTLALT 60
Query: 61 XXXXXXXXXXVWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS 120
VWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS
Sbjct: 61 LLTSSQAILIVWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS 120
Query: 121 FDEVSVYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQ 180
FDEVSVYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQ
Sbjct: 121 FDEVSVYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQ 180
Query: 181 WAAFILLCAGCTTAQLNPSSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNI 240
WAAFILLCAGCTTAQLNPSSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNI
Sbjct: 181 WAAFILLCAGCTTAQLNPSSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNI 240
Query: 241 NVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 300
NVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY
Sbjct: 241 NVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 300
Query: 301 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVYLHSVGKPQPQK 356
ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVYLHSVGKPQPQK
Sbjct: 301 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVYLHSVGKPQPQK 356
>Os06g0523400 Nucleotide-sugar transporter family protein
Length = 322
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 173/284 (60%), Gaps = 13/284 (4%)
Query: 73 SKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTSFDEVSVYPIPAI 132
S+ GKY+Y T F E K S L++ S + R++ + + +Y +P++
Sbjct: 24 SQSNGKYKYDYATIPFLAELFKLSFSSFFLWKECQS---SSPPRMTKEWRSIRLYLVPSV 80
Query: 133 LYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCAGCT 192
+Y++ N +Q+ YVD YQI+ NL I++TG+L+R++LK+KLS +QW A +LL G T
Sbjct: 81 IYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRKLSNLQWMAVVLLAVGTT 140
Query: 193 TAQL----NPSSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLY 248
T+Q+ + D + P QG+++ I+ A LS AGVYTE ++KK + ++ QN LY
Sbjct: 141 TSQVKGCGDAPCDSLFSAPFQGYMLGILSACLSALAGVYTEYLMKKN-NDSLYWQNVQLY 199
Query: 249 IFGMLFNLVAICVQDFDAVMNKG-----FFHGYSFITVLMILNHALSGIAVSMVMKYADN 303
FG++FN+ + DF A +G F+GYS T +++ N +G+ VS +MKY+DN
Sbjct: 200 TFGVIFNMGWLIYGDFKAGFERGPWWQRLFNGYSITTWMVVFNLGSTGLLVSWLMKYSDN 259
Query: 304 IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVYLH 347
IVKVYSTS+AMLLT V+SV+LF +L FLG + +S+ ++
Sbjct: 260 IVKVYSTSMAMLLTMVLSVYLFNVRATLQLFLGIVICIISLQMY 303
>Os02g0604300 Nucleotide-sugar transporter family protein
Length = 405
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 10/283 (3%)
Query: 73 SKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS-FDEVS----VY 127
SK GK+++S + NF E K + +++ L Q V E L+ S F + + +
Sbjct: 64 SKVDGKFQFSPISVNFLTEVTKVVFAIVMLIIQSRKQKVGEKPLLARSTFIQAARNNALL 123
Query: 128 PIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL 187
+PA+LY + N L++ + Y + ++L NL ++ VL + I+K++ S IQW A LL
Sbjct: 124 AVPALLYAINNYLKFIMQLYFNPSTVKMLSNLKVLVIAVLLKFIMKRRFSVIQWEALALL 183
Query: 188 CAGCTTAQLN--PSSDHVLQTPIQG--WVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQ 243
G + QL P+ + P+ ++ ++ + A VY E +K + +I +Q
Sbjct: 184 LIGISINQLRTVPAGNTAFGLPVTAIAYIYTLIFVTVPSLASVYNEYALKSQYDTSIYLQ 243
Query: 244 NFWLYIFGMLFNLVAIC-VQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYAD 302
N +LY +G +FN + I F + G+S T+ +I N+A GI S KYAD
Sbjct: 244 NLFLYGYGAIFNFLGILGTALFQGPESFNILRGHSRATMFLICNNAAQGILSSFFFKYAD 303
Query: 303 NIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVY 345
I+K YS++VA + T + S G L++ F LG +VV +S++
Sbjct: 304 TILKKYSSTVATIFTGLASAAFLGHTLTINFLLGISVVFISMH 346
>Os01g0898900 Nucleotide-sugar transporter family protein
Length = 402
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 10/282 (3%)
Query: 74 KRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLSTS-FDEVS----VYP 128
K GK+++S + NF E K + ++I L V E L+ S F + + +
Sbjct: 64 KVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVLLA 123
Query: 129 IPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 188
+PA+ Y + N +++ + Y + ++L NL ++ VL ++I++++ S IQW A LL
Sbjct: 124 VPALFYAINNYMKFVMQLYFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTIQWEALALLL 183
Query: 189 AGCTTAQLN--PSSDHVLQTPIQG--WVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQN 244
G + QL P L P+ ++ + + A VY E +K + +I +QN
Sbjct: 184 IGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIYLQN 243
Query: 245 FWLYIFGMLFNLVAICVQDF-DAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADN 303
+LY +G +FN + + + + G+S T+ +I N+A GI S KYAD
Sbjct: 244 LFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKYADT 303
Query: 304 IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVY 345
I+K YS+++A + T V S LFG L++ F L ++V +S++
Sbjct: 304 ILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMH 345
>Os04g0490600 Nucleotide-sugar transporter family protein
Length = 293
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 73 SKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLS-TSFDEVS----VY 127
SK GK+++S + NF E K + +++ L Q V E LS ++F + + +
Sbjct: 64 SKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNNALL 123
Query: 128 PIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL 187
+PA+LY + N L++ + Y ++L NL ++ +L + I+++K S IQW A LL
Sbjct: 124 AVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEALALL 183
Query: 188 CAGCTTAQLNPSSDHV----LQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSRNINVQ 243
G + QL+ D L ++ ++ + A VY E +K + +I +Q
Sbjct: 184 LIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSIYLQ 243
Query: 244 NFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG---YSFITVL 282
N +LY +G +FN F ++ F G +SF+T+L
Sbjct: 244 NLFLYGYGAIFN--------FLGILGTVIFQGPQCFSFVTML 277
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,382,451
Number of extensions: 308778
Number of successful extensions: 727
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)