Os04g0490600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-sugar transporter family protein.
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Os04g0490600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-sugar transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.34 | 0.263 | 8.76 | -0.0392 | 0.541 | -0.572 | -0.518 | -0.651 | 0.0363 | 6.26 | 20.38 | 15 | -- | -- |
| 31.59 | 0.262 | 8.75 | 0.0684 | 0.534 | -0.601 | -0.465 | -- | 0.0642 | 6.34 | 21.5 | 14 | -- | -- |
| 31.87 | 0.265 | 8.76 | -0.0398 | 0.549 | -0.531 | -- | -0.546 | 0.033 | 6.08 | 21.29 | 14 | -- | -- |
| 32.09 | 0.264 | 8.75 | 0.055 | 0.539 | -0.575 | -- | -- | 0.0628 | 6.11 | 21.5 | 14 | -- | -- |
| 42.65 | 0.304 | 8.76 | 0.117 | -- | -0.884 | -- | 0.333 | 0.0983 | -- | 23.49 | 159 | -- | -- |
| 37.23 | 0.286 | 8.77 | -0.0644 | 0.694 | -- | -0.0295 | -- | -0.0343 | 5.14 | -- | -- | -- | -- |
| 37.23 | 0.286 | 8.77 | -0.0644 | 0.694 | -- | -- | -- | -0.0342 | 5.13 | -- | -- | -- | -- |
| 42.58 | 0.304 | 8.76 | 0.109 | -- | -0.862 | -- | -- | 0.0872 | -- | 23.45 | 154 | -- | -- |
| 32.17 | 0.264 | 8.75 | -- | 0.543 | -0.557 | -- | -- | 0.0533 | 6.07 | 21.58 | 14 | -- | -- |
| 62.46 | 0.369 | 8.78 | -0.0398 | -- | -- | -- | -- | -0.0166 | -- | -- | -- | -- | -- |
| 37.34 | 0.286 | 8.77 | -- | 0.693 | -- | -- | -- | -0.027 | 5.14 | -- | -- | -- | -- |
| 42.88 | 0.305 | 8.76 | -- | -- | -0.843 | -- | -- | 0.0699 | -- | 23.63 | 152 | -- | -- |
| 62.5 | 0.369 | 8.78 | -- | -- | -- | -- | -- | -0.0122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 5 | 26.43 | temperature | 15 | 90 | > th | dose dependent | sin | 3 | NA |
| 8 | 26.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 13 | 26.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 15 | 26.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 21 | 26.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 44 | 27.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 45 | 27.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 52 | 27.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 53 | 27.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 93 | 27.35 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 97 | 27.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 114 | 27.49 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 150 | 27.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 162 | 27.74 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 230 | 28.06 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 251 | 28.12 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 257 | 28.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 263 | 28.17 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 394 | 28.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 9 |
| 444 | 28.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 489 | 28.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 543 | 28.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 863 | 29.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 875 | 29.54 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 879 | 29.55 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 14 |
| 911 | 29.60 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 984 | 29.72 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |