BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0490600 Os04g0490600|AK063469
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0490600 Nucleotide-sugar transporter family protein 590 e-169
Os02g0604300 Nucleotide-sugar transporter family protein 496 e-141
Os01g0898900 Nucleotide-sugar transporter family protein 422 e-118
Os06g0523400 Nucleotide-sugar transporter family protein 99 3e-21
Os07g0573700 Nucleotide-sugar transporter family protein 94 1e-19
>Os04g0490600 Nucleotide-sugar transporter family protein
Length = 293
Score = 590 bits (1522), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MQRNGVMECSVCHSKVVAPSPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPIL 60
MQRNGVMECSVCHSKVVAPSPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPIL
Sbjct: 1 MQRNGVMECSVCHSKVVAPSPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPIL 60
Query: 61 VFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNN 120
VFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNN
Sbjct: 61 VFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNN 120
Query: 121 ALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEAL 180
ALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEAL
Sbjct: 121 ALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEAL 180
Query: 181 ALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSI 240
ALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSI
Sbjct: 181 ALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSI 240
Query: 241 YLQNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTMLHKAFSLHSSLSMQTQF 293
YLQNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTMLHKAFSLHSSLSMQTQF
Sbjct: 241 YLQNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTMLHKAFSLHSSLSMQTQF 293
>Os02g0604300 Nucleotide-sugar transporter family protein
Length = 405
Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/272 (87%), Positives = 259/272 (95%)
Query: 1 MQRNGVMECSVCHSKVVAPSPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPIL 60
MQRNGV+ECSVC S++V PSPRSVSRAYDKHRSKISSK+RALN LLV GDCILVGLQPIL
Sbjct: 1 MQRNGVVECSVCRSRLVVPSPRSVSRAYDKHRSKISSKFRALNVLLVVGDCILVGLQPIL 60
Query: 61 VFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNN 120
VFMSKVDGKFQFSPISVNFLTEVTKV+FAIVMLIIQSRKQKVGEKPLL+ STF+QAARNN
Sbjct: 61 VFMSKVDGKFQFSPISVNFLTEVTKVVFAIVMLIIQSRKQKVGEKPLLARSTFIQAARNN 120
Query: 121 ALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEAL 180
ALLAVPALLYAINNYLKFIMQLYF+P+TVKMLSNLKVLVIA+LLKFIM+R+FS+IQWEAL
Sbjct: 121 ALLAVPALLYAINNYLKFIMQLYFNPSTVKMLSNLKVLVIAVLLKFIMKRRFSVIQWEAL 180
Query: 181 ALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSI 240
ALLLIGIS+NQL ++P G +FGL VT IAYIYTLIFVTVPSLASVYNEYALKSQ+DTSI
Sbjct: 181 ALLLIGISINQLRTVPAGNTAFGLPVTAIAYIYTLIFVTVPSLASVYNEYALKSQYDTSI 240
Query: 241 YLQNLFLYGYGAIFNFLGILGTVIFQGPQCFS 272
YLQNLFLYGYGAIFNFLGILGT +FQGP+ F+
Sbjct: 241 YLQNLFLYGYGAIFNFLGILGTALFQGPESFN 272
>Os01g0898900 Nucleotide-sugar transporter family protein
Length = 402
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/278 (73%), Positives = 238/278 (85%), Gaps = 1/278 (0%)
Query: 4 NGVMECSVCHSKVVAP-SPRSVSRAYDKHRSKISSKYRALNFLLVSGDCILVGLQPILVF 62
+G +EC VCH+KV P + +VS+AYD HRS +SS+ RALN LLVSGDC+L GLQPILV+
Sbjct: 2 SGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILVY 61
Query: 63 MSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLSTFVQAARNNAL 122
M KVDGKF+FSP+SVNFLTE+TK+IFAI+ML IQ+R+ KVGEKP L++STF+QAARNN L
Sbjct: 62 MCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVL 121
Query: 123 LAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRKFSIIQWEALAL 182
LAVPAL YAINNY+KF+MQLYF+PATVKML NLKVLVIA+LLK IMRR+FS IQWEALAL
Sbjct: 122 LAVPALFYAINNYMKFVMQLYFNPATVKMLGNLKVLVIAVLLKVIMRRRFSTIQWEALAL 181
Query: 183 LLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYALKSQFDTSIYL 242
LLIGISVNQL S+P+G+ + GL V AY+YTL FVTVP+LASVYNE ALKSQFDTSIYL
Sbjct: 182 LLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIYL 241
Query: 243 QNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTMLHKA 280
QNLFLYGYGAIFNFLG++ T I QGP F+ + KA
Sbjct: 242 QNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKA 279
>Os06g0523400 Nucleotide-sugar transporter family protein
Length = 322
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 111/204 (54%), Gaps = 9/204 (4%)
Query: 52 ILVGLQPILVFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLS 111
+L Q IL +S+ +GK+++ ++ FL E+ K+ F+ L ++ + P ++
Sbjct: 12 VLTSSQGILTTLSQSNGKYKYDYATIPFLAELFKLSFSSFFLW---KECQSSSPPRMT-- 66
Query: 112 TFVQAARNNALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRK 171
+ R+ L VP+++Y I+N ++F Y P+T +++ NLK++ IL + +++RK
Sbjct: 67 ---KEWRSIRLYLVPSVIYLIHNNVQFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRK 123
Query: 172 FSIIQWEALALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYA 231
S +QW A+ LL +G + +Q+ D + Y+ ++ + +LA VY EY
Sbjct: 124 LSNLQWMAVVLLAVGTTTSQVKGCGDAPCDSLFSAPFQGYMLGILSACLSALAGVYTEYL 183
Query: 232 LKSQFDTSIYLQNLFLYGYGAIFN 255
+K D S+Y QN+ LY +G IFN
Sbjct: 184 MKKNND-SLYWQNVQLYTFGVIFN 206
>Os07g0573700 Nucleotide-sugar transporter family protein
Length = 356
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 20/234 (8%)
Query: 52 ILVGLQPILVFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKVGEKPLLSLS 111
+L Q IL+ SK GK+++S + NF E K + +++ L Q V E LS +
Sbjct: 61 LLTSSQAILIVWSKRAGKYEYSVTTANFSVEALKCLLSLIALYRTWNSQGVTEDNRLS-T 119
Query: 112 TFVQAARNNALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVIAILLKFIMRRK 171
+F + + + +PA+LY + N L++ + Y ++L NL ++ +L + I+++K
Sbjct: 120 SFDEVS----VYPIPAILYMVKNLLQYYIFAYVDAPAYQILKNLNIISTGVLYRIILKKK 175
Query: 172 FSIIQWEALALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFVTVPSLASVYNEYA 231
S IQW A LL G + QL+ D L ++ ++ + A VY E
Sbjct: 176 LSEIQWAAFILLCAGCTTAQLNPSSDHV----LQTPIQGWVMAIVMALLSGFAGVYTEAI 231
Query: 232 LKSQFDTSIYLQNLFLYGYGAIFN--------FLGILGTVIFQGPQCFSFVTML 277
+K + +I +QN +LY +G +FN F ++ F G +SF+T+L
Sbjct: 232 IKKRPSRNINVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG---YSFITVL 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,950,396
Number of extensions: 270507
Number of successful extensions: 796
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)