Os07g0573700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-sugar transporter family protein.
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Os07g0573700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-sugar transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.93 | 0.484 | 5.78 | -0.342 | 0.474 | 1.33 | -0.557 | -1.41 | -0.0521 | 14.7 | 20.56 | 1390 | -- | -- |
| 106.81 | 0.481 | 5.73 | -0.00888 | 0.385 | 1.55 | -0.409 | -- | 0.0351 | 13.5 | 16.54 | 1982 | -- | -- |
| 106.98 | 0.482 | 5.78 | -0.331 | 0.471 | 1.32 | -- | -1.33 | -0.0487 | 14.6 | 20.71 | 1391 | -- | -- |
| 107.47 | 0.483 | 5.73 | -0.0486 | 0.419 | 1.59 | -- | -- | 0.0282 | 13.1 | 16.54 | 2040 | -- | -- |
| 113.94 | 0.497 | 5.78 | -0.318 | -- | 1.36 | -- | -1.22 | -0.0523 | -- | 20.43 | 1743 | -- | -- |
| 157.02 | 0.587 | 5.66 | 0.537 | 0.361 | -- | -0.608 | -- | 0.359 | 14.9 | -- | -- | -- | -- |
| 158.26 | 0.589 | 5.66 | 0.523 | 0.357 | -- | -- | -- | 0.355 | 14.6 | -- | -- | -- | -- |
| 115.25 | 0.5 | 5.75 | -0.0269 | -- | 1.54 | -- | -- | 0.019 | -- | 17.03 | 1751 | -- | -- |
| 107.51 | 0.483 | 5.73 | -- | 0.414 | 1.56 | -- | -- | 0.0363 | 13.1 | 16.6 | 2034 | -- | -- |
| 165.71 | 0.602 | 5.67 | 0.508 | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
| 165.47 | 0.602 | 5.68 | -- | 0.347 | -- | -- | -- | 0.297 | 14.6 | -- | -- | -- | -- |
| 115.24 | 0.5 | 5.74 | -- | -- | 1.52 | -- | -- | 0.0332 | -- | 17.29 | 1753 | -- | -- |
| 172.51 | 0.613 | 5.68 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 101.34 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 34 | 101.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 35 | 101.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 39 | 101.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 88 | 102.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 89 | 102.05 | temperature | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 98 | 102.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 105 | 102.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 114 | 102.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 210 | 102.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 336 | 102.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 350 | 102.77 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 362 | 102.79 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 363 | 102.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 370 | 102.81 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 373 | 102.82 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 403 | 102.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 408 | 102.91 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 420 | 102.95 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 438 | 103.01 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 440 | 103.01 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 467 | 103.04 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 483 | 103.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 504 | 103.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 508 | 103.09 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 518 | 103.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 546 | 103.17 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 552 | 103.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 592 | 103.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 593 | 103.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 623 | 103.25 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 628 | 103.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 639 | 103.25 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 664 | 103.26 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 674 | 103.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 723 | 103.29 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 750 | 103.30 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 768 | 103.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 779 | 103.33 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 797 | 103.35 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 799 | 103.35 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 806 | 103.36 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 865 | 103.41 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 891 | 103.45 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 917 | 103.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 927 | 103.50 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 936 | 103.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 941 | 103.51 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 942 | 103.51 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 948 | 103.53 | temperature | 20 | 43200 | < th | dose independent | sin | 15 | NA |
| 950 | 103.53 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 953 | 103.53 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 971 | 103.55 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |